fast.genomicscompare 6,575 genera of bacteria & archaea

 

Roseobacter litoralis Och 149

Genome identifier: GCF_000154785.2

NCBI assembly name: ASM15478v2

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Roseobacter, Roseobacter litoralis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Roseobacter, Roseobacter litoralis

Scaffolds: 4

Genes: 4,549 Protein-coding: 4,405 RNAs: 44 pseudogenes: 100

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NC_015728.1 Roseobacter litoralis Och 149 plasmid pRLO149_83, complete sequence 83,129
NC_015729.1 Roseobacter litoralis Och 149 plasmid pRLO149_63, complete sequence 63,532
NC_015730.1 Roseobacter litoralis Och 149, complete sequence 4,505,211
NC_015741.1 Roseobacter litoralis Och 149 plasmid pRLO149_94, complete sequence 93,578

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory