fast.genomicscompare 6,575 genera of bacteria & archaea

 

Octadecabacter arcticus 238

Genome identifier: GCF_000155735.2

NCBI assembly name: ASM15573v2

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Octadecabacter, Octadecabacter arcticus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Octadecabacter, Octadecabacter arcticus

Scaffolds: 3

Genes: 5,695 Protein-coding: 5,038 RNAs: 52 pseudogenes: 605

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NC_020908.1 Octadecabacter arcticus 238, complete sequence 5,200,279
NC_020909.1 Octadecabacter arcticus 238 plasmid pOA238_118, complete sequence 118,287
NC_020910.1 Octadecabacter arcticus 238 plasmid pOA238_160, complete sequence 159,683

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory