fast.genomicscompare 6,575 genera of bacteria & archaea

 

Alloprevotella tannerae ATCC 51259

Genome identifier: GCF_000159995.1

NCBI assembly name: ASM15999v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Bacteroidales, Bacteroidaceae, Alloprevotella, Alloprevotella tannerae

NCBI taxonomy: Bacteria, Bacteroidota, Bacteroidia, Bacteroidales, Prevotellaceae, Alloprevotella, Alloprevotella tannerae

Scaffolds: 6

Genes: 2,148 Protein-coding: 2,007 RNAs: 53 pseudogenes: 88

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_GG700642.1 Alloprevotella tannerae ATCC 51259 Scfld0, whole genome shotgun sequence 1,429,330
NZ_GG700643.1 Alloprevotella tannerae ATCC 51259 Scfld1, whole genome shotgun sequence 1,056,177
NZ_GG700644.1 Alloprevotella tannerae ATCC 51259 Scfld2, whole genome shotgun sequence 98,596
NZ_GG700645.1 Alloprevotella tannerae ATCC 51259 Scfld3, whole genome shotgun sequence 549
NZ_GG700646.1 Alloprevotella tannerae ATCC 51259 Scfld4, whole genome shotgun sequence 549
NZ_GG700647.1 Alloprevotella tannerae ATCC 51259 Scfld5, whole genome shotgun sequence 518

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory