fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudorhodobacter_B sp000176015 SW2

Genome identifier: GCF_000176015.1

NCBI assembly name: ASM17601v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Pseudorhodobacter_B, Pseudorhodobacter_B sp000176015

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Rhodobacter

Scaffolds: 59

Genes: 3,483 Protein-coding: 3,360 RNAs: 50 pseudogenes: 73

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_ACYY01000001.1 Rhodobacter sp. SW2 ctg00042, whole genome shotgun sequence 312,930
NZ_ACYY01000002.1 Rhodobacter sp. SW2 ctg00050, whole genome shotgun sequence 274,438
NZ_ACYY01000003.1 Rhodobacter sp. SW2 ctg00019, whole genome shotgun sequence 215,986
NZ_ACYY01000004.1 Rhodobacter sp. SW2 ctg00052, whole genome shotgun sequence 197,969
NZ_ACYY01000005.1 Rhodobacter sp. SW2 ctg00021, whole genome shotgun sequence 188,067
NZ_ACYY01000006.1 Rhodobacter sp. SW2 ctg00018, whole genome shotgun sequence 183,978
NZ_ACYY01000007.1 Rhodobacter sp. SW2 ctg00055, whole genome shotgun sequence 164,990
NZ_ACYY01000008.1 Rhodobacter sp. SW2 ctg00020, whole genome shotgun sequence 134,306
NZ_ACYY01000009.1 Rhodobacter sp. SW2 ctg00031, whole genome shotgun sequence 127,138
NZ_ACYY01000010.1 Rhodobacter sp. SW2 ctg00044, whole genome shotgun sequence 123,593
NZ_ACYY01000011.1 Rhodobacter sp. SW2 ctg00026, whole genome shotgun sequence 116,042
NZ_ACYY01000012.1 Rhodobacter sp. SW2 ctg00060, whole genome shotgun sequence 113,576
NZ_ACYY01000013.1 Rhodobacter sp. SW2 ctg00049, whole genome shotgun sequence 110,152
NZ_ACYY01000014.1 Rhodobacter sp. SW2 ctg00051, whole genome shotgun sequence 104,344
NZ_ACYY01000015.1 Rhodobacter sp. SW2 ctg00024, whole genome shotgun sequence 97,591
NZ_ACYY01000016.1 Rhodobacter sp. SW2 ctg00038, whole genome shotgun sequence 92,604
NZ_ACYY01000017.1 Rhodobacter sp. SW2 ctg00054, whole genome shotgun sequence 65,572
NZ_ACYY01000018.1 Rhodobacter sp. SW2 ctg00036, whole genome shotgun sequence 62,170
NZ_ACYY01000019.1 Rhodobacter sp. SW2 ctg00037, whole genome shotgun sequence 59,257
NZ_ACYY01000020.1 Rhodobacter sp. SW2 ctg00041, whole genome shotgun sequence 58,720
NZ_ACYY01000021.1 Rhodobacter sp. SW2 ctg00025, whole genome shotgun sequence 58,175
NZ_ACYY01000022.1 Rhodobacter sp. SW2 ctg00039, whole genome shotgun sequence 56,014
NZ_ACYY01000023.1 Rhodobacter sp. SW2 ctg00056, whole genome shotgun sequence 53,913
NZ_ACYY01000024.1 Rhodobacter sp. SW2 ctg00043, whole genome shotgun sequence 53,819
NZ_ACYY01000025.1 Rhodobacter sp. SW2 ctg00027, whole genome shotgun sequence 49,810
NZ_ACYY01000026.1 Rhodobacter sp. SW2 ctg00022, whole genome shotgun sequence 45,471
NZ_ACYY01000027.1 Rhodobacter sp. SW2 ctg00046, whole genome shotgun sequence 45,011
NZ_ACYY01000028.1 Rhodobacter sp. SW2 ctg00057, whole genome shotgun sequence 43,114
NZ_ACYY01000029.1 Rhodobacter sp. SW2 ctg00032, whole genome shotgun sequence 43,044
NZ_ACYY01000030.1 Rhodobacter sp. SW2 ctg00033, whole genome shotgun sequence 39,796
NZ_ACYY01000031.1 Rhodobacter sp. SW2 ctg00030, whole genome shotgun sequence 34,186
NZ_ACYY01000032.1 Rhodobacter sp. SW2 ctg00023, whole genome shotgun sequence 33,893
NZ_ACYY01000033.1 Rhodobacter sp. SW2 ctg00047, whole genome shotgun sequence 31,564
NZ_ACYY01000034.1 Rhodobacter sp. SW2 ctg00053, whole genome shotgun sequence 24,960
NZ_ACYY01000035.1 Rhodobacter sp. SW2 ctg00040, whole genome shotgun sequence 19,484
NZ_ACYY01000036.1 Rhodobacter sp. SW2 ctg00045, whole genome shotgun sequence 15,706
NZ_ACYY01000037.1 Rhodobacter sp. SW2 ctg00029, whole genome shotgun sequence 15,084
NZ_ACYY01000038.1 Rhodobacter sp. SW2 ctg00028, whole genome shotgun sequence 10,298
NZ_ACYY01000039.1 Rhodobacter sp. SW2 ctg00062, whole genome shotgun sequence 5,621
NZ_ACYY01000040.1 Rhodobacter sp. SW2 ctg00035, whole genome shotgun sequence 5,179
NZ_ACYY01000041.1 Rhodobacter sp. SW2 ctg00080, whole genome shotgun sequence 5,129
NZ_ACYY01000042.1 Rhodobacter sp. SW2 ctg00034, whole genome shotgun sequence 4,225
NZ_ACYY01000043.1 Rhodobacter sp. SW2 ctg00058, whole genome shotgun sequence 1,929
NZ_ACYY01000044.1 Rhodobacter sp. SW2 ctg00071, whole genome shotgun sequence 1,882
NZ_ACYY01000045.1 Rhodobacter sp. SW2 ctg00015, whole genome shotgun sequence 1,595
NZ_ACYY01000046.1 Rhodobacter sp. SW2 ctg00072, whole genome shotgun sequence 1,270
NZ_ACYY01000047.1 Rhodobacter sp. SW2 ctg00013, whole genome shotgun sequence 1,245
NZ_ACYY01000048.1 Rhodobacter sp. SW2 ctg00004, whole genome shotgun sequence 1,245
NZ_ACYY01000049.1 Rhodobacter sp. SW2 ctg00066, whole genome shotgun sequence 1,158
NZ_ACYY01000050.1 Rhodobacter sp. SW2 ctg00014, whole genome shotgun sequence 1,152
NZ_ACYY01000051.1 Rhodobacter sp. SW2 ctg00006, whole genome shotgun sequence 918
NZ_ACYY01000052.1 Rhodobacter sp. SW2 ctg00079, whole genome shotgun sequence 814
NZ_ACYY01000053.1 Rhodobacter sp. SW2 ctg00012, whole genome shotgun sequence 724
NZ_ACYY01000054.1 Rhodobacter sp. SW2 ctg00002, whole genome shotgun sequence 681
NZ_ACYY01000055.1 Rhodobacter sp. SW2 ctg00007, whole genome shotgun sequence 611
NZ_ACYY01000056.1 Rhodobacter sp. SW2 ctg00010, whole genome shotgun sequence 572
NZ_ACYY01000057.1 Rhodobacter sp. SW2 ctg00048, whole genome shotgun sequence 558
NZ_ACYY01000058.1 Rhodobacter sp. SW2 ctg00017, whole genome shotgun sequence 554
NZ_ACYY01000059.1 Rhodobacter sp. SW2 ctg00005, whole genome shotgun sequence 515

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory