fast.genomicscompare 6,575 genera of bacteria & archaea

 

Brevundimonas diminuta ATCC 11568

Genome identifier: GCF_000204035.1

NCBI assembly name: ASM20403v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Caulobacterales, Caulobacteraceae, Brevundimonas, Brevundimonas diminuta

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Caulobacterales, Caulobacteraceae, Brevundimonas, Brevundimonas diminuta

Scaffolds: 8

Genes: 3,415 Protein-coding: 3,244 RNAs: 54 pseudogenes: 117

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_GL883082.1 Brevundimonas diminuta ATCC 11568 BDIM_scaffold00001, whole genome shotgun sequence 2,257
NZ_GL883083.1 Brevundimonas diminuta ATCC 11568 BDIM_scaffold00002, whole genome shotgun sequence 2,013
NZ_GL883084.1 Brevundimonas diminuta ATCC 11568 BDIM_scaffold00003, whole genome shotgun sequence 721,717
NZ_GL883085.1 Brevundimonas diminuta ATCC 11568 BDIM_scaffold00004, whole genome shotgun sequence 2,075
NZ_GL883086.1 Brevundimonas diminuta ATCC 11568 BDIM_scaffold00005, whole genome shotgun sequence 2,631,526
NZ_GL883087.1 Brevundimonas diminuta ATCC 11568 BDIM_scaffold00006, whole genome shotgun sequence 2,079
NZ_GL883088.1 Brevundimonas diminuta ATCC 11568 BDIM_scaffold00007, whole genome shotgun sequence 2,046
NZ_GL883089.1 Brevundimonas diminuta ATCC 11568 BDIM_scaffold00008, whole genome shotgun sequence 5,603

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory