fast.genomicscompare 6,575 genera of bacteria & archaea

 

Oscillibacter ruminantium GH1

Genome identifier: GCF_000307265.1

NCBI assembly name: ASM30726v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Oscillospirales, Oscillospiraceae, Oscillibacter, Oscillibacter ruminantium

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Oscillospiraceae, Oscillibacter, Oscillibacter ruminantium

Scaffolds: 29

Genes: 2,987 Protein-coding: 2,882 RNAs: 63 pseudogenes: 42

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_BAGW01000040.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 1,901
NZ_BAGW01000041.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 1,428
NZ_BAGW01000042.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 1,356
NZ_BAGW01000043.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 1,330
NZ_BAGW01000044.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 1,298
NZ_BAGW01000045.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 700
NZ_BAGW01000046.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 502
NZ_BAGW01000047.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 461
NZ_BAGW01000048.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 393
NZ_BAGW01000049.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 358
NZ_BAGW01000050.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 249
NZ_BAGW01000051.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 244
NZ_BAGW01000052.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 191
NZ_BAGW01000053.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 193
NZ_BAGW01000054.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 191
NZ_BAGW01000055.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 186
NZ_BAGW01000056.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 165
NZ_BAGW01000057.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 138
NZ_BAGW01000058.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 119
NZ_DF158896.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 959,256
NZ_DF158897.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 699,560
NZ_DF158898.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 530,568
NZ_DF158899.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 412,976
NZ_DF158900.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 283,662
NZ_DF158901.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 193,405
NZ_DF158902.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 6,282
NZ_DF158903.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 5,955
NZ_DF158904.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 2,755
NZ_DF158905.1 Oscillibacter ruminantium GH1, whole genome shotgun sequence 2,420

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory