fast.genomicscompare 6,575 genera of bacteria & archaea

 

Sphingobium yanoikuyae ATCC 51230

Genome identifier: GCF_000315525.1

NCBI assembly name: Sphi_yano_ATCC_51230_V1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingobium, Sphingobium yanoikuyae

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingobium, Sphingobium yanoikuyae

Scaffolds: 9

Genes: 5,201 Protein-coding: 5,064 RNAs: 75 pseudogenes: 62

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JH992904.1 Sphingobium yanoikuyae ATCC 51230 supercont1.1, whole genome shotgun sequence 5,402,660
NZ_JH992905.1 Sphingobium yanoikuyae ATCC 51230 supercont1.2, whole genome shotgun sequence 68,922
NZ_JH992906.1 Sphingobium yanoikuyae ATCC 51230 supercont1.3, whole genome shotgun sequence 21,691
NZ_JH992907.1 Sphingobium yanoikuyae ATCC 51230 supercont1.4, whole genome shotgun sequence 20,125
NZ_JH992908.1 Sphingobium yanoikuyae ATCC 51230 supercont1.5, whole genome shotgun sequence 5,337
NZ_JH992909.1 Sphingobium yanoikuyae ATCC 51230 supercont1.6, whole genome shotgun sequence 5,185
NZ_JH992910.1 Sphingobium yanoikuyae ATCC 51230 supercont1.7, whole genome shotgun sequence 4,553
NZ_JH992911.1 Sphingobium yanoikuyae ATCC 51230 supercont1.8, whole genome shotgun sequence 2,059
NZ_JH992912.1 Sphingobium yanoikuyae ATCC 51230 supercont1.9, whole genome shotgun sequence 2,047

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory