fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pacificimonas flava JLT2015

Genome identifier: GCF_000342165.1

NCBI assembly name: Alphaproteobacteria-version1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Pacificimonas, Pacificimonas flava

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingosinicellaceae, Pacificimonas, Pacificimonas flava

Scaffolds: 38

Genes: 3,053 Protein-coding: 2,953 RNAs: 58 pseudogenes: 42

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_AMRV01000001.1 Pacificimonas flava strain JLT2015 contig00001, whole genome shotgun sequence 598,343
NZ_AMRV01000002.1 Pacificimonas flava strain JLT2015 contig00002, whole genome shotgun sequence 504,606
NZ_AMRV01000003.1 Pacificimonas flava strain JLT2015 contig00003, whole genome shotgun sequence 467,452
NZ_AMRV01000004.1 Pacificimonas flava strain JLT2015 contig00004, whole genome shotgun sequence 260,593
NZ_AMRV01000005.1 Pacificimonas flava strain JLT2015 contig00005, whole genome shotgun sequence 196,890
NZ_AMRV01000006.1 Pacificimonas flava strain JLT2015 contig00006, whole genome shotgun sequence 170,375
NZ_AMRV01000007.1 Pacificimonas flava strain JLT2015 contig00007, whole genome shotgun sequence 158,856
NZ_AMRV01000008.1 Pacificimonas flava strain JLT2015 contig00008, whole genome shotgun sequence 148,128
NZ_AMRV01000009.1 Pacificimonas flava strain JLT2015 contig00009, whole genome shotgun sequence 111,924
NZ_AMRV01000010.1 Pacificimonas flava strain JLT2015 contig00010, whole genome shotgun sequence 98,241
NZ_AMRV01000011.1 Pacificimonas flava strain JLT2015 contig00011, whole genome shotgun sequence 82,339
NZ_AMRV01000012.1 Pacificimonas flava strain JLT2015 contig00012, whole genome shotgun sequence 73,635
NZ_AMRV01000013.1 Pacificimonas flava strain JLT2015 contig00013, whole genome shotgun sequence 56,229
NZ_AMRV01000014.1 Pacificimonas flava strain JLT2015 contig00014, whole genome shotgun sequence 42,341
NZ_AMRV01000015.1 Pacificimonas flava strain JLT2015 contig00015, whole genome shotgun sequence 37,894
NZ_AMRV01000016.1 Pacificimonas flava strain JLT2015 contig00016, whole genome shotgun sequence 31,492
NZ_AMRV01000017.1 Pacificimonas flava strain JLT2015 contig00017, whole genome shotgun sequence 30,389
NZ_AMRV01000018.1 Pacificimonas flava strain JLT2015 contig00018, whole genome shotgun sequence 26,575
NZ_AMRV01000019.1 Pacificimonas flava strain JLT2015 contig00019, whole genome shotgun sequence 24,374
NZ_AMRV01000020.1 Pacificimonas flava strain JLT2015 contig00020, whole genome shotgun sequence 23,410
NZ_AMRV01000021.1 Pacificimonas flava strain JLT2015 contig00021, whole genome shotgun sequence 16,884
NZ_AMRV01000022.1 Pacificimonas flava strain JLT2015 contig00022, whole genome shotgun sequence 12,347
NZ_AMRV01000023.1 Pacificimonas flava strain JLT2015 contig00023, whole genome shotgun sequence 11,825
NZ_AMRV01000024.1 Pacificimonas flava strain JLT2015 contig00024, whole genome shotgun sequence 11,819
NZ_AMRV01000025.1 Pacificimonas flava strain JLT2015 contig00025, whole genome shotgun sequence 11,296
NZ_AMRV01000026.1 Pacificimonas flava strain JLT2015 contig00026, whole genome shotgun sequence 10,284
NZ_AMRV01000027.1 Pacificimonas flava strain JLT2015 contig00027, whole genome shotgun sequence 8,192
NZ_AMRV01000028.1 Pacificimonas flava strain JLT2015 contig00028, whole genome shotgun sequence 5,742
NZ_AMRV01000029.1 Pacificimonas flava strain JLT2015 contig00029, whole genome shotgun sequence 4,752
NZ_AMRV01000030.1 Pacificimonas flava strain JLT2015 contig00030, whole genome shotgun sequence 3,179
NZ_AMRV01000031.1 Pacificimonas flava strain JLT2015 contig00031, whole genome shotgun sequence 2,525
NZ_AMRV01000032.1 Pacificimonas flava strain JLT2015 contig00032, whole genome shotgun sequence 2,506
NZ_AMRV01000033.1 Pacificimonas flava strain JLT2015 contig00033, whole genome shotgun sequence 2,487
NZ_AMRV01000034.1 Pacificimonas flava strain JLT2015 contig00034, whole genome shotgun sequence 1,636
NZ_AMRV01000035.1 Pacificimonas flava strain JLT2015 contig00035, whole genome shotgun sequence 1,444
NZ_AMRV01000036.1 Pacificimonas flava strain JLT2015 contig00036, whole genome shotgun sequence 1,157
NZ_AMRV01000037.1 Pacificimonas flava strain JLT2015 contig00037, whole genome shotgun sequence 888
NZ_AMRV01000038.1 Pacificimonas flava strain JLT2015 contig00038, whole genome shotgun sequence 884

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory