fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pannonibacter phragmitetus DSM 14782

Genome identifier: GCF_000382365.1

NCBI assembly name: ASM38236v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Stappiaceae, Pannonibacter, Pannonibacter phragmitetus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Stappiaceae, Pannonibacter, Pannonibacter phragmitetus

Scaffolds: 40

Genes: 4,299 Protein-coding: 4,199 RNAs: 57 pseudogenes: 43

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_KB908215.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00001.1, whole genome shotgun sequence 1,064,432
NZ_KB908216.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00002.2, whole genome shotgun sequence 414,115
NZ_KB908217.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00003.3, whole genome shotgun sequence 358,172
NZ_KB908218.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00004.4, whole genome shotgun sequence 329,065
NZ_KB908219.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00005.5, whole genome shotgun sequence 220,441
NZ_KB908220.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00006.6, whole genome shotgun sequence 214,804
NZ_KB908221.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00007.7, whole genome shotgun sequence 199,453
NZ_KB908222.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00008.8, whole genome shotgun sequence 186,221
NZ_KB908223.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00009.9, whole genome shotgun sequence 158,837
NZ_KB908224.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00010.10, whole genome shotgun sequence 145,946
NZ_KB908225.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00011.11, whole genome shotgun sequence 142,960
NZ_KB908226.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00012.12, whole genome shotgun sequence 135,229
NZ_KB908227.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00013.13, whole genome shotgun sequence 129,154
NZ_KB908228.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00014.14, whole genome shotgun sequence 127,769
NZ_KB908229.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00015.15, whole genome shotgun sequence 122,826
NZ_KB908230.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00016.16, whole genome shotgun sequence 108,679
NZ_KB908231.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00017.17, whole genome shotgun sequence 102,849
NZ_KB908232.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00018.18, whole genome shotgun sequence 100,361
NZ_KB908233.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00019.19, whole genome shotgun sequence 93,258
NZ_KB908234.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00020.20, whole genome shotgun sequence 82,502
NZ_KB908235.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00021.21, whole genome shotgun sequence 69,427
NZ_KB908236.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00022.22, whole genome shotgun sequence 50,237
NZ_KB908237.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00023.23, whole genome shotgun sequence 45,505
NZ_KB908238.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00024.24, whole genome shotgun sequence 41,460
NZ_KB908239.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00025.25, whole genome shotgun sequence 34,376
NZ_KB908240.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00026.26, whole genome shotgun sequence 27,438
NZ_KB908241.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00027.27, whole genome shotgun sequence 23,929
NZ_KB908242.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00028.28, whole genome shotgun sequence 16,750
NZ_KB908243.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00029.29, whole genome shotgun sequence 13,178
NZ_KB908244.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00030.30, whole genome shotgun sequence 4,578
NZ_KB908245.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00031.31, whole genome shotgun sequence 4,538
NZ_KB908246.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00032.32, whole genome shotgun sequence 2,614
NZ_KB908247.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00033.33, whole genome shotgun sequence 2,110
NZ_KB908248.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00034.34, whole genome shotgun sequence 2,014
NZ_KB908249.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00035.35, whole genome shotgun sequence 1,832
NZ_KB908250.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00036.36, whole genome shotgun sequence 1,624
NZ_KB908251.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00037.37, whole genome shotgun sequence 1,352
NZ_KB908252.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00038.38, whole genome shotgun sequence 1,318
NZ_KB908253.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00039.39, whole genome shotgun sequence 1,216
NZ_KB908254.1 Pannonibacter phragmitetus DSM 14782 H163DRAFT_scaffold00040.40, whole genome shotgun sequence 1,186

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory