fast.genomicscompare 6,575 genera of bacteria & archaea

 

Empedobacter brevis ATCC 43319

Genome identifier: GCF_000382425.1

NCBI assembly name: ASM38242v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Weeksellaceae, Empedobacter, Empedobacter brevis

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Weeksellaceae, Empedobacter, Empedobacter brevis

Scaffolds: 28

Genes: 3,605 Protein-coding: 3,515 RNAs: 69 pseudogenes: 21

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_KB908291.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00001.1, whole genome shotgun sequence 614,059
NZ_KB908292.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00002.2, whole genome shotgun sequence 460,332
NZ_KB908293.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00003.3, whole genome shotgun sequence 372,595
NZ_KB908294.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00004.4, whole genome shotgun sequence 316,555
NZ_KB908295.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00005.5, whole genome shotgun sequence 290,273
NZ_KB908296.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00006.6, whole genome shotgun sequence 276,535
NZ_KB908297.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00007.7, whole genome shotgun sequence 210,787
NZ_KB908298.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00008.8, whole genome shotgun sequence 167,698
NZ_KB908299.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00009.9, whole genome shotgun sequence 164,617
NZ_KB908300.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00010.10, whole genome shotgun sequence 136,682
NZ_KB908301.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00011.11, whole genome shotgun sequence 117,856
NZ_KB908302.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00012.12, whole genome shotgun sequence 112,723
NZ_KB908303.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00013.13, whole genome shotgun sequence 110,950
NZ_KB908304.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00014.14, whole genome shotgun sequence 93,939
NZ_KB908305.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00015.15, whole genome shotgun sequence 89,792
NZ_KB908306.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00016.16, whole genome shotgun sequence 83,602
NZ_KB908307.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00017.17, whole genome shotgun sequence 66,249
NZ_KB908308.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00018.18, whole genome shotgun sequence 51,742
NZ_KB908309.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00019.19, whole genome shotgun sequence 28,689
NZ_KB908310.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00020.20, whole genome shotgun sequence 7,374
NZ_KB908311.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00021.21, whole genome shotgun sequence 3,866
NZ_KB908312.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00022.22, whole genome shotgun sequence 3,415
NZ_KB908313.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00023.23, whole genome shotgun sequence 2,887
NZ_KB908314.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00024.24, whole genome shotgun sequence 2,748
NZ_KB908315.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00025.25, whole genome shotgun sequence 2,397
NZ_KB908316.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00026.26, whole genome shotgun sequence 1,445
NZ_KB908317.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00027.27, whole genome shotgun sequence 1,390
NZ_KB908318.1 Empedobacter brevis NBRC 14943 = ATCC 43319 H277DRAFT_scaffold00028.28, whole genome shotgun sequence 1,281

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory