fast.genomicscompare 6,575 genera of bacteria & archaea

 

Ponticaulis koreensis DSM 19734

Genome identifier: GCF_000420665.1

NCBI assembly name: ASM42066v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Caulobacterales, Hyphomonadaceae, Ponticaulis, Ponticaulis koreensis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomonadales, Hyphomonadaceae, Ponticaulis, Ponticaulis koreensis

Scaffolds: 6

Genes: 3,378 Protein-coding: 3,323 RNAs: 48 pseudogenes: 7

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_ATVJ01000001.1 Ponticaulis koreensis DSM 19734 G523DRAFT_scaffold00001.1_C, whole genome shotgun sequence 2,348,061
NZ_ATVJ01000002.1 Ponticaulis koreensis DSM 19734 G523DRAFT_scaffold00002.2_C, whole genome shotgun sequence 610,912
NZ_ATVJ01000003.1 Ponticaulis koreensis DSM 19734 G523DRAFT_scaffold00003.3_C, whole genome shotgun sequence 390,298
NZ_ATVJ01000004.1 Ponticaulis koreensis DSM 19734 G523DRAFT_scaffold00004.4_C, whole genome shotgun sequence 44,675
NZ_ATVJ01000005.1 Ponticaulis koreensis DSM 19734 G523DRAFT_scaffold00005.5_C, whole genome shotgun sequence 5,251
NZ_ATVJ01000006.1 Ponticaulis koreensis DSM 19734 G523DRAFT_scaffold00006.6_C, whole genome shotgun sequence 1,182

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory