fast.genomicscompare 6,575 genera of bacteria & archaea

 

Sandarakinorhabdus limnophila DSM 17366

Genome identifier: GCF_000420765.1

NCBI assembly name: ASM42076v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sandarakinorhabdus, Sandarakinorhabdus limnophila

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingosinicellaceae, Sandarakinorhabdus, Sandarakinorhabdus limnophila

Scaffolds: 11

Genes: 2,589 Protein-coding: 2,519 RNAs: 50 pseudogenes: 20

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_ATVO01000001.1 Sandarakinorhabdus limnophila DSM 17366 G566DRAFT_scaffold00010.10_C, whole genome shotgun sequence 1,373
NZ_ATVO01000002.1 Sandarakinorhabdus limnophila DSM 17366 G566DRAFT_scaffold00011.11_C, whole genome shotgun sequence 1,221
NZ_ATVO01000003.1 Sandarakinorhabdus limnophila DSM 17366 G566DRAFT_scaffold00001.1_C, whole genome shotgun sequence 621,794
NZ_ATVO01000004.1 Sandarakinorhabdus limnophila DSM 17366 G566DRAFT_scaffold00002.2_C, whole genome shotgun sequence 437,350
NZ_ATVO01000005.1 Sandarakinorhabdus limnophila DSM 17366 G566DRAFT_scaffold00003.3_C, whole genome shotgun sequence 422,408
NZ_ATVO01000006.1 Sandarakinorhabdus limnophila DSM 17366 G566DRAFT_scaffold00004.4_C, whole genome shotgun sequence 406,224
NZ_ATVO01000007.1 Sandarakinorhabdus limnophila DSM 17366 G566DRAFT_scaffold00005.5_C, whole genome shotgun sequence 226,512
NZ_ATVO01000008.1 Sandarakinorhabdus limnophila DSM 17366 G566DRAFT_scaffold00006.6_C, whole genome shotgun sequence 199,629
NZ_ATVO01000009.1 Sandarakinorhabdus limnophila DSM 17366 G566DRAFT_scaffold00007.7_C, whole genome shotgun sequence 154,768
NZ_ATVO01000010.1 Sandarakinorhabdus limnophila DSM 17366 G566DRAFT_scaffold00008.8_C, whole genome shotgun sequence 134,653
NZ_ATVO01000011.1 Sandarakinorhabdus limnophila DSM 17366 G566DRAFT_scaffold00009.9_C, whole genome shotgun sequence 7,807

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory