fast.genomicscompare 6,575 genera of bacteria & archaea

 

Thalassospira lucentensis DSM 14000

Genome identifier: GCF_000421265.1

NCBI assembly name: ASM42126v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales_A, Thalassospiraceae, Thalassospira, Thalassospira lucentensis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales, Thalassospiraceae, Thalassospira, Thalassospira lucentensis

Scaffolds: 22

Genes: 4,376 Protein-coding: 4,278 RNAs: 65 pseudogenes: 33

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_ATWN01000001.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00001.1_C, whole genome shotgun sequence 879,648
NZ_ATWN01000002.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00002.2_C, whole genome shotgun sequence 576,416
NZ_ATWN01000003.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00003.3_C, whole genome shotgun sequence 499,767
NZ_ATWN01000004.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00004.4_C, whole genome shotgun sequence 426,836
NZ_ATWN01000005.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00005.5_C, whole genome shotgun sequence 385,381
NZ_ATWN01000006.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00006.6_C, whole genome shotgun sequence 341,044
NZ_ATWN01000007.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00007.7_C, whole genome shotgun sequence 265,676
NZ_ATWN01000008.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00008.8_C, whole genome shotgun sequence 259,997
NZ_ATWN01000009.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00009.9_C, whole genome shotgun sequence 228,167
NZ_ATWN01000010.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00010.10_C, whole genome shotgun sequence 213,946
NZ_ATWN01000011.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00011.11_C, whole genome shotgun sequence 210,733
NZ_ATWN01000012.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00012.12_C, whole genome shotgun sequence 138,734
NZ_ATWN01000013.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00013.13_C, whole genome shotgun sequence 105,639
NZ_ATWN01000014.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00014.14_C, whole genome shotgun sequence 74,759
NZ_ATWN01000015.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00015.15_C, whole genome shotgun sequence 62,414
NZ_ATWN01000016.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00016.16_C, whole genome shotgun sequence 16,531
NZ_ATWN01000017.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00017.17_C, whole genome shotgun sequence 14,472
NZ_ATWN01000018.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00018.18_C, whole genome shotgun sequence 14,076
NZ_ATWN01000019.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00019.19_C, whole genome shotgun sequence 13,626
NZ_ATWN01000020.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00020.20_C, whole genome shotgun sequence 12,662
NZ_ATWN01000021.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00021.21_C, whole genome shotgun sequence 2,888
NZ_ATWN01000022.1 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 K355DRAFT_scaffold00022.22_C, whole genome shotgun sequence 2,842

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory