fast.genomicscompare 6,575 genera of bacteria & archaea

 

Aurantimonas coralicida DSM 14790

Genome identifier: GCF_000421645.1

NCBI assembly name: ASM42164v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, Aurantimonas, Aurantimonas coralicida

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Aurantimonadaceae, Aurantimonas, Aurantimonas coralicida

Scaffolds: 38

Genes: 4,446 Protein-coding: 4,308 RNAs: 61 pseudogenes: 77

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_ATXK01000001.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00001.1_C, whole genome shotgun sequence 1,002,993
NZ_ATXK01000002.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00002.2_C, whole genome shotgun sequence 839,816
NZ_ATXK01000003.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00003.3_C, whole genome shotgun sequence 413,768
NZ_ATXK01000004.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00004.4_C, whole genome shotgun sequence 316,167
NZ_ATXK01000005.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00005.5_C, whole genome shotgun sequence 300,468
NZ_ATXK01000006.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00006.6_C, whole genome shotgun sequence 238,617
NZ_ATXK01000007.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00007.7_C, whole genome shotgun sequence 199,811
NZ_ATXK01000008.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00008.8_C, whole genome shotgun sequence 184,062
NZ_ATXK01000009.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00009.9_C, whole genome shotgun sequence 175,202
NZ_ATXK01000010.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00010.10_C, whole genome shotgun sequence 154,837
NZ_ATXK01000011.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00011.11_C, whole genome shotgun sequence 154,565
NZ_ATXK01000012.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00012.12_C, whole genome shotgun sequence 140,304
NZ_ATXK01000013.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00013.13_C, whole genome shotgun sequence 105,353
NZ_ATXK01000014.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00014.14_C, whole genome shotgun sequence 98,965
NZ_ATXK01000015.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00015.15_C, whole genome shotgun sequence 44,707
NZ_ATXK01000016.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00016.16_C, whole genome shotgun sequence 37,943
NZ_ATXK01000017.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00017.17_C, whole genome shotgun sequence 35,123
NZ_ATXK01000018.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00018.18_C, whole genome shotgun sequence 25,170
NZ_ATXK01000019.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00019.19_C, whole genome shotgun sequence 23,684
NZ_ATXK01000020.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00020.20_C, whole genome shotgun sequence 20,698
NZ_ATXK01000021.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00021.21_C, whole genome shotgun sequence 11,267
NZ_ATXK01000022.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00022.22_C, whole genome shotgun sequence 10,421
NZ_ATXK01000023.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00023.23_C, whole genome shotgun sequence 10,320
NZ_ATXK01000024.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00024.24_C, whole genome shotgun sequence 8,494
NZ_ATXK01000025.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00025.25_C, whole genome shotgun sequence 8,408
NZ_ATXK01000026.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00026.26_C, whole genome shotgun sequence 8,131
NZ_ATXK01000027.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00027.27_C, whole genome shotgun sequence 7,870
NZ_ATXK01000028.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00028.28_C, whole genome shotgun sequence 6,957
NZ_ATXK01000029.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00029.29_C, whole genome shotgun sequence 6,432
NZ_ATXK01000030.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00030.30_C, whole genome shotgun sequence 5,484
NZ_ATXK01000031.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00031.31_C, whole genome shotgun sequence 3,828
NZ_ATXK01000032.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00032.32_C, whole genome shotgun sequence 3,769
NZ_ATXK01000033.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00033.33_C, whole genome shotgun sequence 3,317
NZ_ATXK01000034.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00034.34_C, whole genome shotgun sequence 2,079
NZ_ATXK01000035.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00035.35_C, whole genome shotgun sequence 2,004
NZ_ATXK01000036.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00036.36_C, whole genome shotgun sequence 1,753
NZ_ATXK01000037.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00037.37_C, whole genome shotgun sequence 1,558
NZ_ATXK01000038.1 Aurantimonas coralicida DSM 14790 H536DRAFT_scaffold00038.38_C, whole genome shotgun sequence 1,302

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory