fast.genomicscompare 6,575 genera of bacteria & archaea

 

Thiopseudomonas caeni DSM 24390

Genome identifier: GCF_000421765.1

NCBI assembly name: ASM42176v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Pseudomonadaceae, Thiopseudomonas, Thiopseudomonas caeni

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Pseudomonadaceae, Denitrificimonas, Denitrificimonas caeni

Scaffolds: 24

Genes: 2,836 Protein-coding: 2,756 RNAs: 51 pseudogenes: 29

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_ATXQ01000001.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00001.1_C, whole genome shotgun sequence 612,766
NZ_ATXQ01000002.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00002.2_C, whole genome shotgun sequence 509,722
NZ_ATXQ01000003.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00003.3_C, whole genome shotgun sequence 328,490
NZ_ATXQ01000004.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00004.4_C, whole genome shotgun sequence 312,453
NZ_ATXQ01000005.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00005.5_C, whole genome shotgun sequence 232,479
NZ_ATXQ01000006.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00006.6_C, whole genome shotgun sequence 193,965
NZ_ATXQ01000007.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00007.7_C, whole genome shotgun sequence 185,233
NZ_ATXQ01000008.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00008.8_C, whole genome shotgun sequence 158,325
NZ_ATXQ01000009.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00009.9_C, whole genome shotgun sequence 118,561
NZ_ATXQ01000010.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00010.10_C, whole genome shotgun sequence 92,381
NZ_ATXQ01000011.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00011.11_C, whole genome shotgun sequence 86,461
NZ_ATXQ01000012.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00012.12_C, whole genome shotgun sequence 73,718
NZ_ATXQ01000013.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00013.13_C, whole genome shotgun sequence 25,430
NZ_ATXQ01000014.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00014.14_C, whole genome shotgun sequence 23,247
NZ_ATXQ01000015.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00015.15_C, whole genome shotgun sequence 16,058
NZ_ATXQ01000016.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00016.16_C, whole genome shotgun sequence 13,675
NZ_ATXQ01000017.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00017.17_C, whole genome shotgun sequence 12,396
NZ_ATXQ01000018.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00018.18_C, whole genome shotgun sequence 8,966
NZ_ATXQ01000019.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00019.19_C, whole genome shotgun sequence 5,301
NZ_ATXQ01000020.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00020.20_C, whole genome shotgun sequence 4,804
NZ_ATXQ01000021.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00021.21_C, whole genome shotgun sequence 2,973
NZ_ATXQ01000022.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00022.22_C, whole genome shotgun sequence 2,256
NZ_ATXQ01000023.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00023.23_C, whole genome shotgun sequence 1,409
NZ_ATXQ01000024.1 Denitrificimonas caeni DSM 24390 H591DRAFT_scaffold00024.24_C, whole genome shotgun sequence 1,256

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory