fast.genomicscompare 6,575 genera of bacteria & archaea

 

Oceanobacter kriegii DSM 6294

Genome identifier: GCF_000422845.1

NCBI assembly name: ASM42284v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, DSM-6294, Oceanobacter, Oceanobacter kriegii

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Oceanospirillales, Oceanospirillaceae, Oceanobacter, Oceanobacter kriegii

Scaffolds: 36

Genes: 3,996 Protein-coding: 3,930 RNAs: 59 pseudogenes: 7

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_AUGV01000003.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00002.2_C, whole genome shotgun sequence 658,372
NZ_AUGV01000004.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00003.3_C, whole genome shotgun sequence 531,381
NZ_AUGV01000007.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00005.5_C, whole genome shotgun sequence 244,533
NZ_AUGV01000008.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00006.6_C, whole genome shotgun sequence 235,096
NZ_AUGV01000009.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00007.7_C, whole genome shotgun sequence 226,131
NZ_AUGV01000016.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00011.11_C, whole genome shotgun sequence 168,663
NZ_AUGV01000017.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00012.12_C, whole genome shotgun sequence 144,276
NZ_AUGV01000018.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00013.13_C, whole genome shotgun sequence 115,341
NZ_AUGV01000019.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00014.14_C, whole genome shotgun sequence 112,796
NZ_AUGV01000020.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00015.15_C, whole genome shotgun sequence 96,985
NZ_AUGV01000021.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00016.16_C, whole genome shotgun sequence 67,973
NZ_AUGV01000022.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00017.17_C, whole genome shotgun sequence 62,857
NZ_AUGV01000023.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00018.18_C, whole genome shotgun sequence 50,971
NZ_AUGV01000024.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00019.19_C, whole genome shotgun sequence 41,156
NZ_AUGV01000025.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00020.20_C, whole genome shotgun sequence 24,527
NZ_AUGV01000026.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00021.21_C, whole genome shotgun sequence 24,411
NZ_AUGV01000027.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00022.22_C, whole genome shotgun sequence 21,663
NZ_AUGV01000028.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00023.23_C, whole genome shotgun sequence 20,484
NZ_AUGV01000029.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00024.24_C, whole genome shotgun sequence 15,407
NZ_AUGV01000030.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00025.25_C, whole genome shotgun sequence 15,064
NZ_AUGV01000031.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00026.26_C, whole genome shotgun sequence 10,568
NZ_AUGV01000032.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00027.27_C, whole genome shotgun sequence 5,390
NZ_AUGV01000033.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00028.28_C, whole genome shotgun sequence 5,256
NZ_AUGV01000034.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00029.29_C, whole genome shotgun sequence 5,004
NZ_AUGV01000035.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00030.30_C, whole genome shotgun sequence 3,856
NZ_AUGV01000036.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00031.31_C, whole genome shotgun sequence 2,522
NZ_AUGV01000037.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00032.32_C, whole genome shotgun sequence 1,975
NZ_AUGV01000038.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00033.33_C, whole genome shotgun sequence 1,370
NZ_AUGV01000039.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00034.34_C, whole genome shotgun sequence 1,110
NZ_AUGV01000040.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00035.35_C, whole genome shotgun sequence 1,094
NZ_AUGV01000041.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00036.36_C, whole genome shotgun sequence 1,083
NZ_KE383931.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00001.1, whole genome shotgun sequence 718,698
NZ_KE383932.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00004.4, whole genome shotgun sequence 298,987
NZ_KE383933.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00008.8, whole genome shotgun sequence 216,083
NZ_KE383934.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00009.9, whole genome shotgun sequence 184,871
NZ_KE383935.1 Oceanobacter kriegii DSM 6294 G516DRAFT_scaffold00010.10, whole genome shotgun sequence 169,880

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory