fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pleomorphomonas oryzae DSM 16300

Genome identifier: GCF_000422965.1

NCBI assembly name: ASM42296v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Pleomorphomonadaceae, Pleomorphomonas, Pleomorphomonas oryzae

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Pleomorphomonadaceae, Pleomorphomonas, Pleomorphomonas oryzae

Scaffolds: 37

Genes: 4,891 Protein-coding: 4,789 RNAs: 54 pseudogenes: 48

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_AUHB01000001.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00001.1_C, whole genome shotgun sequence 652,348
NZ_AUHB01000002.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00002.2_C, whole genome shotgun sequence 509,324
NZ_AUHB01000003.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00003.3_C, whole genome shotgun sequence 482,060
NZ_AUHB01000004.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00004.4_C, whole genome shotgun sequence 377,103
NZ_AUHB01000005.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00005.5_C, whole genome shotgun sequence 364,828
NZ_AUHB01000006.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00006.6_C, whole genome shotgun sequence 356,878
NZ_AUHB01000007.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00007.7_C, whole genome shotgun sequence 263,898
NZ_AUHB01000008.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00008.8_C, whole genome shotgun sequence 242,312
NZ_AUHB01000009.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00009.9_C, whole genome shotgun sequence 239,146
NZ_AUHB01000010.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00010.10_C, whole genome shotgun sequence 229,470
NZ_AUHB01000011.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00011.11_C, whole genome shotgun sequence 202,194
NZ_AUHB01000012.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00012.12_C, whole genome shotgun sequence 194,048
NZ_AUHB01000013.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00013.13_C, whole genome shotgun sequence 179,879
NZ_AUHB01000014.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00014.14_C, whole genome shotgun sequence 153,147
NZ_AUHB01000015.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00015.15_C, whole genome shotgun sequence 148,117
NZ_AUHB01000018.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00017.17_C, whole genome shotgun sequence 104,441
NZ_AUHB01000019.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00018.18_C, whole genome shotgun sequence 102,520
NZ_AUHB01000020.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00019.19_C, whole genome shotgun sequence 74,812
NZ_AUHB01000021.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00020.20_C, whole genome shotgun sequence 54,219
NZ_AUHB01000022.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00021.21_C, whole genome shotgun sequence 45,164
NZ_AUHB01000023.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00022.22_C, whole genome shotgun sequence 27,379
NZ_AUHB01000024.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00023.23_C, whole genome shotgun sequence 18,755
NZ_AUHB01000025.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00024.24_C, whole genome shotgun sequence 17,404
NZ_AUHB01000026.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00025.25_C, whole genome shotgun sequence 12,132
NZ_AUHB01000027.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00026.26_C, whole genome shotgun sequence 8,368
NZ_AUHB01000028.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00027.27_C, whole genome shotgun sequence 8,228
NZ_AUHB01000029.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00028.28_C, whole genome shotgun sequence 4,831
NZ_AUHB01000030.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00029.29_C, whole genome shotgun sequence 3,546
NZ_AUHB01000031.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00030.30_C, whole genome shotgun sequence 3,442
NZ_AUHB01000032.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00031.31_C, whole genome shotgun sequence 2,232
NZ_AUHB01000033.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00032.32_C, whole genome shotgun sequence 1,927
NZ_AUHB01000034.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00033.33_C, whole genome shotgun sequence 1,632
NZ_AUHB01000035.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00034.34_C, whole genome shotgun sequence 1,528
NZ_AUHB01000036.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00035.35_C, whole genome shotgun sequence 1,511
NZ_AUHB01000037.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00036.36_C, whole genome shotgun sequence 1,283
NZ_AUHB01000038.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00037.37_C, whole genome shotgun sequence 1,122
NZ_KE383965.1 Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00016.16, whole genome shotgun sequence 139,224

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory