fast.genomicscompare 6,575 genera of bacteria & archaea

 

Kaistia adipata DSM 17808

Genome identifier: GCF_000423225.1

NCBI assembly name: ASM42322v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Kaistiaceae, Kaistia, Kaistia adipata

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Kaistiaceae, Kaistia, Kaistia adipata

Scaffolds: 12

Genes: 4,586 Protein-coding: 4,498 RNAs: 58 pseudogenes: 30

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_AUHO01000001.1 Kaistia adipata DSM 17808 G539DRAFT_scaffold00010.10_C, whole genome shotgun sequence 7,175
NZ_AUHO01000002.1 Kaistia adipata DSM 17808 G539DRAFT_scaffold00011.11_C, whole genome shotgun sequence 4,566
NZ_AUHO01000003.1 Kaistia adipata DSM 17808 G539DRAFT_scaffold00012.12_C, whole genome shotgun sequence 1,322
NZ_AUHO01000006.1 Kaistia adipata DSM 17808 G539DRAFT_scaffold00002.2_C, whole genome shotgun sequence 962,244
NZ_AUHO01000007.1 Kaistia adipata DSM 17808 G539DRAFT_scaffold00003.3_C, whole genome shotgun sequence 830,527
NZ_AUHO01000010.1 Kaistia adipata DSM 17808 G539DRAFT_scaffold00005.5_C, whole genome shotgun sequence 573,137
NZ_AUHO01000011.1 Kaistia adipata DSM 17808 G539DRAFT_scaffold00006.6_C, whole genome shotgun sequence 133,869
NZ_AUHO01000012.1 Kaistia adipata DSM 17808 G539DRAFT_scaffold00007.7_C, whole genome shotgun sequence 66,115
NZ_AUHO01000013.1 Kaistia adipata DSM 17808 G539DRAFT_scaffold00008.8_C, whole genome shotgun sequence 40,361
NZ_AUHO01000014.1 Kaistia adipata DSM 17808 G539DRAFT_scaffold00009.9_C, whole genome shotgun sequence 18,030
NZ_KE383991.1 Kaistia adipata DSM 17808 G539DRAFT_scaffold00001.1, whole genome shotgun sequence 1,593,317
NZ_KE383992.1 Kaistia adipata DSM 17808 G539DRAFT_scaffold00004.4, whole genome shotgun sequence 608,540

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory