fast.genomicscompare 6,575 genera of bacteria & archaea

 

Stappia stellulata DSM 5886

Genome identifier: GCF_000423705.1

NCBI assembly name: ASM42370v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Stappiaceae, Stappia, Stappia stellulata

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Stappiaceae, Stappia, Stappia stellulata

Scaffolds: 12

Genes: 4,270 Protein-coding: 4,171 RNAs: 70 pseudogenes: 29

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_AUIM01000001.1 Stappia stellulata DSM 5886 G572DRAFT_scaffold00010.10_C, whole genome shotgun sequence 15,738
NZ_AUIM01000002.1 Stappia stellulata DSM 5886 G572DRAFT_scaffold00011.11_C, whole genome shotgun sequence 1,742
NZ_AUIM01000003.1 Stappia stellulata DSM 5886 G572DRAFT_scaffold00012.12_C, whole genome shotgun sequence 1,511
NZ_AUIM01000004.1 Stappia stellulata DSM 5886 G572DRAFT_scaffold00001.1_C, whole genome shotgun sequence 1,068,062
NZ_AUIM01000010.1 Stappia stellulata DSM 5886 G572DRAFT_scaffold00004.4_C, whole genome shotgun sequence 477,966
NZ_AUIM01000011.1 Stappia stellulata DSM 5886 G572DRAFT_scaffold00005.5_C, whole genome shotgun sequence 470,593
NZ_AUIM01000012.1 Stappia stellulata DSM 5886 G572DRAFT_scaffold00006.6_C, whole genome shotgun sequence 351,674
NZ_AUIM01000013.1 Stappia stellulata DSM 5886 G572DRAFT_scaffold00007.7_C, whole genome shotgun sequence 121,588
NZ_AUIM01000014.1 Stappia stellulata DSM 5886 G572DRAFT_scaffold00008.8_C, whole genome shotgun sequence 51,252
NZ_AUIM01000015.1 Stappia stellulata DSM 5886 G572DRAFT_scaffold00009.9_C, whole genome shotgun sequence 17,024
NZ_KE384082.1 Stappia stellulata DSM 5886 G572DRAFT_scaffold00002.2, whole genome shotgun sequence 1,051,551
NZ_KE384083.1 Stappia stellulata DSM 5886 G572DRAFT_scaffold00003.3, whole genome shotgun sequence 994,470

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory