fast.genomicscompare 6,575 genera of bacteria & archaea

 

Clostridium_X cadaveris AGR2141

Genome identifier: GCF_000424205.1

NCBI assembly name: ASM42420v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Clostridiales, Clostridiaceae, Clostridium_X, Clostridium_X cadaveris

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Clostridiaceae, Clostridium, Clostridium cadaveris

Scaffolds: 42

Genes: 3,454 Protein-coding: 3,345 RNAs: 76 pseudogenes: 33

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_AUJL01000001.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00001.1_C, whole genome shotgun sequence 338,407
NZ_AUJL01000002.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00002.2_C, whole genome shotgun sequence 326,753
NZ_AUJL01000005.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00004.4_C, whole genome shotgun sequence 230,912
NZ_AUJL01000006.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00005.5_C, whole genome shotgun sequence 178,520
NZ_AUJL01000007.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00006.6_C, whole genome shotgun sequence 173,737
NZ_AUJL01000008.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00007.7_C, whole genome shotgun sequence 166,453
NZ_AUJL01000009.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00008.8_C, whole genome shotgun sequence 141,803
NZ_AUJL01000010.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00009.9_C, whole genome shotgun sequence 120,480
NZ_AUJL01000013.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00011.11_C, whole genome shotgun sequence 99,647
NZ_AUJL01000016.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00013.13_C, whole genome shotgun sequence 92,891
NZ_AUJL01000017.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00014.14_C, whole genome shotgun sequence 84,644
NZ_AUJL01000018.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00015.15_C, whole genome shotgun sequence 82,993
NZ_AUJL01000019.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00016.16_C, whole genome shotgun sequence 72,817
NZ_AUJL01000020.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00017.17_C, whole genome shotgun sequence 69,896
NZ_AUJL01000021.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00018.18_C, whole genome shotgun sequence 64,977
NZ_AUJL01000022.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00019.19_C, whole genome shotgun sequence 61,847
NZ_AUJL01000023.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00020.20_C, whole genome shotgun sequence 60,024
NZ_AUJL01000024.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00021.21_C, whole genome shotgun sequence 56,085
NZ_AUJL01000025.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00022.22_C, whole genome shotgun sequence 55,963
NZ_AUJL01000026.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00023.23_C, whole genome shotgun sequence 54,656
NZ_AUJL01000027.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00024.24_C, whole genome shotgun sequence 51,981
NZ_AUJL01000028.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00025.25_C, whole genome shotgun sequence 51,050
NZ_AUJL01000029.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00026.26_C, whole genome shotgun sequence 49,829
NZ_AUJL01000030.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00027.27_C, whole genome shotgun sequence 46,778
NZ_AUJL01000031.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00028.28_C, whole genome shotgun sequence 41,765
NZ_AUJL01000032.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00029.29_C, whole genome shotgun sequence 37,622
NZ_AUJL01000033.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00030.30_C, whole genome shotgun sequence 37,235
NZ_AUJL01000034.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00031.31_C, whole genome shotgun sequence 30,663
NZ_AUJL01000035.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00032.32_C, whole genome shotgun sequence 26,391
NZ_AUJL01000036.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00033.33_C, whole genome shotgun sequence 24,400
NZ_AUJL01000037.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00034.34_C, whole genome shotgun sequence 19,227
NZ_AUJL01000038.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00035.35_C, whole genome shotgun sequence 16,470
NZ_AUJL01000039.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00036.36_C, whole genome shotgun sequence 16,082
NZ_AUJL01000040.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00037.37_C, whole genome shotgun sequence 14,788
NZ_AUJL01000041.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00038.38_C, whole genome shotgun sequence 11,864
NZ_AUJL01000042.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00039.39_C, whole genome shotgun sequence 10,732
NZ_AUJL01000043.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00040.40_C, whole genome shotgun sequence 4,523
NZ_AUJL01000044.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00041.41_C, whole genome shotgun sequence 4,474
NZ_AUJL01000045.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00042.42_C, whole genome shotgun sequence 1,554
NZ_KE384148.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00003.3, whole genome shotgun sequence 298,083
NZ_KE384149.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00010.10, whole genome shotgun sequence 115,917
NZ_KE384150.1 Clostridium cadaveris AGR2141 G605DRAFT_scaffold00012.12, whole genome shotgun sequence 97,227

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory