fast.genomicscompare 6,575 genera of bacteria & archaea

 

Roseococcus flocculans DSM 14296

Genome identifier: GCF_000425365.1

NCBI assembly name: ASM42536v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Acetobacterales, Acetobacteraceae, Roseococcus, Roseococcus flocculans

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales, Acetobacteraceae, Rubritepida, Rubritepida flocculans

Scaffolds: 74

Genes: 3,828 Protein-coding: 3,728 RNAs: 50 pseudogenes: 50

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_AUDH01000001.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00001.1_C, whole genome shotgun sequence 497,887
NZ_AUDH01000002.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00002.2_C, whole genome shotgun sequence 320,220
NZ_AUDH01000003.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00003.3_C, whole genome shotgun sequence 293,609
NZ_AUDH01000004.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00004.4_C, whole genome shotgun sequence 236,332
NZ_AUDH01000005.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00005.5_C, whole genome shotgun sequence 222,914
NZ_AUDH01000006.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00006.6_C, whole genome shotgun sequence 170,267
NZ_AUDH01000007.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00007.7_C, whole genome shotgun sequence 141,176
NZ_AUDH01000008.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00008.8_C, whole genome shotgun sequence 134,898
NZ_AUDH01000009.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00009.9_C, whole genome shotgun sequence 120,001
NZ_AUDH01000010.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00010.10_C, whole genome shotgun sequence 102,777
NZ_AUDH01000011.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00011.11_C, whole genome shotgun sequence 95,665
NZ_AUDH01000012.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00012.12_C, whole genome shotgun sequence 92,618
NZ_AUDH01000013.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00013.13_C, whole genome shotgun sequence 87,683
NZ_AUDH01000014.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00014.14_C, whole genome shotgun sequence 84,041
NZ_AUDH01000015.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00015.15_C, whole genome shotgun sequence 83,208
NZ_AUDH01000018.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00017.17_C, whole genome shotgun sequence 74,766
NZ_AUDH01000019.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00018.18_C, whole genome shotgun sequence 63,892
NZ_AUDH01000020.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00019.19_C, whole genome shotgun sequence 57,990
NZ_AUDH01000021.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00020.20_C, whole genome shotgun sequence 53,623
NZ_AUDH01000022.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00021.21_C, whole genome shotgun sequence 52,564
NZ_AUDH01000023.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00022.22_C, whole genome shotgun sequence 51,733
NZ_AUDH01000024.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00023.23_C, whole genome shotgun sequence 51,436
NZ_AUDH01000025.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00024.24_C, whole genome shotgun sequence 49,803
NZ_AUDH01000026.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00025.25_C, whole genome shotgun sequence 41,152
NZ_AUDH01000027.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00026.26_C, whole genome shotgun sequence 40,911
NZ_AUDH01000028.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00027.27_C, whole genome shotgun sequence 32,868
NZ_AUDH01000029.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00028.28_C, whole genome shotgun sequence 32,453
NZ_AUDH01000030.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00029.29_C, whole genome shotgun sequence 31,883
NZ_AUDH01000031.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00030.30_C, whole genome shotgun sequence 29,506
NZ_AUDH01000032.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00031.31_C, whole genome shotgun sequence 25,252
NZ_AUDH01000033.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00032.32_C, whole genome shotgun sequence 24,922
NZ_AUDH01000034.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00033.33_C, whole genome shotgun sequence 24,412
NZ_AUDH01000035.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00034.34_C, whole genome shotgun sequence 24,040
NZ_AUDH01000036.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00035.35_C, whole genome shotgun sequence 23,112
NZ_AUDH01000037.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00036.36_C, whole genome shotgun sequence 22,869
NZ_AUDH01000038.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00037.37_C, whole genome shotgun sequence 20,458
NZ_AUDH01000039.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00038.38_C, whole genome shotgun sequence 16,483
NZ_AUDH01000040.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00039.39_C, whole genome shotgun sequence 15,945
NZ_AUDH01000041.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00040.40_C, whole genome shotgun sequence 15,023
NZ_AUDH01000042.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00041.41_C, whole genome shotgun sequence 14,674
NZ_AUDH01000043.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00042.42_C, whole genome shotgun sequence 13,302
NZ_AUDH01000044.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00043.43_C, whole genome shotgun sequence 13,027
NZ_AUDH01000045.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00044.44_C, whole genome shotgun sequence 12,964
NZ_AUDH01000046.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00045.45_C, whole genome shotgun sequence 12,433
NZ_AUDH01000047.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00046.46_C, whole genome shotgun sequence 10,767
NZ_AUDH01000048.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00047.47_C, whole genome shotgun sequence 10,713
NZ_AUDH01000049.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00048.48_C, whole genome shotgun sequence 10,262
NZ_AUDH01000050.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00049.49_C, whole genome shotgun sequence 9,908
NZ_AUDH01000051.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00050.50_C, whole genome shotgun sequence 8,077
NZ_AUDH01000052.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00051.51_C, whole genome shotgun sequence 7,467
NZ_AUDH01000053.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00052.52_C, whole genome shotgun sequence 7,093
NZ_AUDH01000054.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00053.53_C, whole genome shotgun sequence 6,963
NZ_AUDH01000055.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00054.54_C, whole genome shotgun sequence 6,676
NZ_AUDH01000056.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00055.55_C, whole genome shotgun sequence 6,285
NZ_AUDH01000057.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00056.56_C, whole genome shotgun sequence 5,899
NZ_AUDH01000058.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00057.57_C, whole genome shotgun sequence 5,953
NZ_AUDH01000059.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00058.58_C, whole genome shotgun sequence 5,687
NZ_AUDH01000060.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00059.59_C, whole genome shotgun sequence 3,813
NZ_AUDH01000061.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00060.60_C, whole genome shotgun sequence 3,200
NZ_AUDH01000062.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00061.61_C, whole genome shotgun sequence 2,479
NZ_AUDH01000063.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00062.62_C, whole genome shotgun sequence 2,361
NZ_AUDH01000064.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00063.63_C, whole genome shotgun sequence 2,142
NZ_AUDH01000065.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00064.64_C, whole genome shotgun sequence 2,090
NZ_AUDH01000066.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00065.65_C, whole genome shotgun sequence 1,830
NZ_AUDH01000067.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00066.66_C, whole genome shotgun sequence 1,795
NZ_AUDH01000068.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00067.67_C, whole genome shotgun sequence 1,681
NZ_AUDH01000069.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00068.68_C, whole genome shotgun sequence 1,661
NZ_AUDH01000070.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00069.69_C, whole genome shotgun sequence 1,531
NZ_AUDH01000071.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00070.70_C, whole genome shotgun sequence 1,297
NZ_AUDH01000072.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00071.71_C, whole genome shotgun sequence 1,275
NZ_AUDH01000073.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00072.72_C, whole genome shotgun sequence 1,127
NZ_AUDH01000074.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00073.73_C, whole genome shotgun sequence 1,093
NZ_AUDH01000075.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00074.74_C, whole genome shotgun sequence 1,044
NZ_KE384355.1 Rubritepida flocculans DSM 14296 H596DRAFT_scaffold00016.16, whole genome shotgun sequence 75,156

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory