fast.genomicscompare 6,575 genera of bacteria & archaea

 

Nisaea denitrificans DSM 18348

Genome identifier: GCF_000426505.1

NCBI assembly name: ASM42650v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Thalassobaculales, Thalassobaculaceae, Nisaea, Nisaea denitrificans

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales, Thalassobaculaceae, Nisaea, Nisaea denitrificans

Scaffolds: 20

Genes: 4,316 Protein-coding: 4,249 RNAs: 57 pseudogenes: 10

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_AUFM01000001.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00010.10_C, whole genome shotgun sequence 93,810
NZ_AUFM01000002.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00011.11_C, whole genome shotgun sequence 29,051
NZ_AUFM01000003.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00012.12_C, whole genome shotgun sequence 20,250
NZ_AUFM01000004.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00013.13_C, whole genome shotgun sequence 15,772
NZ_AUFM01000005.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00014.14_C, whole genome shotgun sequence 5,006
NZ_AUFM01000006.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00015.15_C, whole genome shotgun sequence 2,857
NZ_AUFM01000007.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00016.16_C, whole genome shotgun sequence 2,267
NZ_AUFM01000008.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00017.17_C, whole genome shotgun sequence 1,527
NZ_AUFM01000009.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00018.18_C, whole genome shotgun sequence 1,190
NZ_AUFM01000010.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00019.19_C, whole genome shotgun sequence 1,154
NZ_AUFM01000011.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00001.1_C, whole genome shotgun sequence 2,011,020
NZ_AUFM01000012.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00020.20_C, whole genome shotgun sequence 1,079
NZ_AUFM01000015.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00003.3_C, whole genome shotgun sequence 550,725
NZ_AUFM01000018.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00005.5_C, whole genome shotgun sequence 212,879
NZ_AUFM01000019.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00006.6_C, whole genome shotgun sequence 186,729
NZ_AUFM01000020.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00007.7_C, whole genome shotgun sequence 163,195
NZ_AUFM01000021.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00008.8_C, whole genome shotgun sequence 153,099
NZ_AUFM01000022.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00009.9_C, whole genome shotgun sequence 140,539
NZ_KE384531.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00002.2, whole genome shotgun sequence 612,160
NZ_KE384532.1 Nisaea denitrificans DSM 18348 K328DRAFT_scaffold00004.4, whole genome shotgun sequence 422,409

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory