fast.genomicscompare 6,575 genera of bacteria & archaea

 

Spirochaeta_E cellobiosiphila DSM 17781

Genome identifier: GCF_000426705.1

NCBI assembly name: ASM42670v1

GTDB taxonomy: Bacteria, Spirochaetota, Spirochaetia, DSM-17781, DSM-17781, Spirochaeta_E, Spirochaeta_E cellobiosiphila

NCBI taxonomy: Bacteria, Spirochaetota, Spirochaetia, Spirochaetales, Spirochaetaceae, Spirochaeta, Spirochaeta cellobiosiphila

Scaffolds: 29

Genes: 3,703 Protein-coding: 3,618 RNAs: 57 pseudogenes: 28

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_AUFW01000007.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00004.4_C, whole genome shotgun sequence 394,611
NZ_AUFW01000012.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00007.7_C, whole genome shotgun sequence 216,094
NZ_AUFW01000017.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00009.9_C, whole genome shotgun sequence 190,699
NZ_AUFW01000018.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00010.10_C, whole genome shotgun sequence 174,377
NZ_AUFW01000019.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00011.11_C, whole genome shotgun sequence 143,980
NZ_AUFW01000020.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00012.12_C, whole genome shotgun sequence 52,073
NZ_AUFW01000021.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00013.13_C, whole genome shotgun sequence 35,708
NZ_AUFW01000022.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00014.14_C, whole genome shotgun sequence 33,984
NZ_AUFW01000023.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00015.15_C, whole genome shotgun sequence 28,111
NZ_AUFW01000024.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00016.16_C, whole genome shotgun sequence 17,100
NZ_AUFW01000025.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00017.17_C, whole genome shotgun sequence 16,386
NZ_AUFW01000026.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00018.18_C, whole genome shotgun sequence 12,829
NZ_AUFW01000027.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00019.19_C, whole genome shotgun sequence 11,779
NZ_AUFW01000028.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00020.20_C, whole genome shotgun sequence 7,236
NZ_AUFW01000029.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00021.21_C, whole genome shotgun sequence 5,445
NZ_AUFW01000030.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00022.22_C, whole genome shotgun sequence 4,892
NZ_AUFW01000031.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00023.23_C, whole genome shotgun sequence 4,372
NZ_AUFW01000032.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00024.24_C, whole genome shotgun sequence 3,190
NZ_AUFW01000033.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00025.25_C, whole genome shotgun sequence 3,120
NZ_AUFW01000034.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00026.26_C, whole genome shotgun sequence 2,256
NZ_AUFW01000035.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00027.27_C, whole genome shotgun sequence 1,575
NZ_AUFW01000036.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00028.28_C, whole genome shotgun sequence 1,250
NZ_AUFW01000037.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00029.29_C, whole genome shotgun sequence 1,200
NZ_KE384554.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00001.1, whole genome shotgun sequence 746,840
NZ_KE384555.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00002.2, whole genome shotgun sequence 506,116
NZ_KE384556.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00003.3, whole genome shotgun sequence 492,152
NZ_KE384557.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00005.5, whole genome shotgun sequence 340,613
NZ_KE384558.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00006.6, whole genome shotgun sequence 289,520
NZ_KE384559.1 Spirochaeta cellobiosiphila DSM 17781 K345DRAFT_scaffold00008.8, whole genome shotgun sequence 212,340

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory