fast.genomicscompare 6,575 genera of bacteria & archaea

 

Methylocella acidiphila B2

Genome identifier: GCF_000427445.1

NCBI assembly name: ASM42744v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Beijerinckiaceae, Methylocella, Methylocella acidiphila

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Beijerinckiaceae, Methylocapsa, Methylocapsa acidiphila

Scaffolds: 2

Genes: 3,688 Protein-coding: 3,525 RNAs: 58 pseudogenes: 105

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_ATYA01000001.1 Methylocapsa acidiphila B2 MetacDRAFT_Contig20.1_C, whole genome shotgun sequence 186,693
NZ_KE386496.1 Methylocapsa acidiphila B2 MetacDRAFT_Scaffold1.2, whole genome shotgun sequence 3,916,740

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory