fast.genomicscompare 6,575 genera of bacteria & archaea

 

Geminicoccus roseus DSM 18922

Genome identifier: GCF_000427665.1

NCBI assembly name: ASM42766v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Geminicoccales, Geminicoccaceae, Geminicoccus, Geminicoccus roseus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales, Geminicoccaceae, Geminicoccus, Geminicoccus roseus

Scaffolds: 5

Genes: 5,250 Protein-coding: 5,111 RNAs: 67 pseudogenes: 72

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_ATYL01000003.1 Geminicoccus roseus DSM 18922 GemroDRAFT_scaffold2.2_C, whole genome shotgun sequence 128,736
NZ_ATYL01000004.1 Geminicoccus roseus DSM 18922 GemroDRAFT_scaffold3.3_C, whole genome shotgun sequence 66,330
NZ_ATYL01000005.1 Geminicoccus roseus DSM 18922 GemroDRAFT_scaffold4.4_C, whole genome shotgun sequence 60,811
NZ_ATYL01000006.1 Geminicoccus roseus DSM 18922 GemroDRAFT_scaffold5.5_C, whole genome shotgun sequence 20,998
NZ_KE386572.1 Geminicoccus roseus DSM 18922 GemroDRAFT_scaffold1.1, whole genome shotgun sequence 5,421,495

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory