fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudodonghicola xiamenensis DSM 18339

Genome identifier: GCF_000429365.1

NCBI assembly name: ASM42936v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Pseudodonghicola, Pseudodonghicola xiamenensis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Pseudodonghicola, Pseudodonghicola xiamenensis

Scaffolds: 87

Genes: 4,547 Protein-coding: 4,401 RNAs: 59 pseudogenes: 87

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_AUBS01000001.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00001.1_C, whole genome shotgun sequence 611,487
NZ_AUBS01000002.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00002.2_C, whole genome shotgun sequence 424,098
NZ_AUBS01000003.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00003.3_C, whole genome shotgun sequence 269,965
NZ_AUBS01000004.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00004.4_C, whole genome shotgun sequence 252,989
NZ_AUBS01000005.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00005.5_C, whole genome shotgun sequence 238,609
NZ_AUBS01000006.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00006.6_C, whole genome shotgun sequence 176,781
NZ_AUBS01000007.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00007.7_C, whole genome shotgun sequence 163,875
NZ_AUBS01000008.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00008.8_C, whole genome shotgun sequence 158,345
NZ_AUBS01000009.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00009.9_C, whole genome shotgun sequence 127,211
NZ_AUBS01000010.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00010.10_C, whole genome shotgun sequence 113,490
NZ_AUBS01000013.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00012.12_C, whole genome shotgun sequence 108,491
NZ_AUBS01000014.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00013.13_C, whole genome shotgun sequence 105,609
NZ_AUBS01000015.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00014.14_C, whole genome shotgun sequence 93,051
NZ_AUBS01000016.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00015.15_C, whole genome shotgun sequence 92,166
NZ_AUBS01000017.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00016.16_C, whole genome shotgun sequence 90,862
NZ_AUBS01000018.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00017.17_C, whole genome shotgun sequence 87,471
NZ_AUBS01000019.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00018.18_C, whole genome shotgun sequence 87,244
NZ_AUBS01000020.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00019.19_C, whole genome shotgun sequence 77,215
NZ_AUBS01000024.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00021.21_C, whole genome shotgun sequence 63,998
NZ_AUBS01000025.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00022.22_C, whole genome shotgun sequence 61,395
NZ_AUBS01000026.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00023.23_C, whole genome shotgun sequence 60,781
NZ_AUBS01000027.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00024.24_C, whole genome shotgun sequence 58,162
NZ_AUBS01000028.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00025.25_C, whole genome shotgun sequence 55,896
NZ_AUBS01000029.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00026.26_C, whole genome shotgun sequence 52,869
NZ_AUBS01000030.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00027.27_C, whole genome shotgun sequence 49,574
NZ_AUBS01000031.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00028.28_C, whole genome shotgun sequence 49,085
NZ_AUBS01000032.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00029.29_C, whole genome shotgun sequence 48,167
NZ_AUBS01000033.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00030.30_C, whole genome shotgun sequence 47,413
NZ_AUBS01000034.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00031.31_C, whole genome shotgun sequence 37,422
NZ_AUBS01000035.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00032.32_C, whole genome shotgun sequence 35,194
NZ_AUBS01000036.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00033.33_C, whole genome shotgun sequence 34,692
NZ_AUBS01000037.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00034.34_C, whole genome shotgun sequence 34,284
NZ_AUBS01000038.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00035.35_C, whole genome shotgun sequence 33,383
NZ_AUBS01000039.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00036.36_C, whole genome shotgun sequence 30,631
NZ_AUBS01000040.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00037.37_C, whole genome shotgun sequence 30,464
NZ_AUBS01000041.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00038.38_C, whole genome shotgun sequence 29,332
NZ_AUBS01000042.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00039.39_C, whole genome shotgun sequence 29,160
NZ_AUBS01000043.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00040.40_C, whole genome shotgun sequence 27,273
NZ_AUBS01000044.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00041.41_C, whole genome shotgun sequence 26,941
NZ_AUBS01000045.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00042.42_C, whole genome shotgun sequence 23,786
NZ_AUBS01000046.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00043.43_C, whole genome shotgun sequence 23,621
NZ_AUBS01000047.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00044.44_C, whole genome shotgun sequence 22,635
NZ_AUBS01000048.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00045.45_C, whole genome shotgun sequence 22,320
NZ_AUBS01000049.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00046.46_C, whole genome shotgun sequence 19,404
NZ_AUBS01000050.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00047.47_C, whole genome shotgun sequence 17,141
NZ_AUBS01000051.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00048.48_C, whole genome shotgun sequence 15,860
NZ_AUBS01000052.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00049.49_C, whole genome shotgun sequence 14,658
NZ_AUBS01000053.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00050.50_C, whole genome shotgun sequence 14,020
NZ_AUBS01000054.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00051.51_C, whole genome shotgun sequence 13,752
NZ_AUBS01000055.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00052.52_C, whole genome shotgun sequence 13,474
NZ_AUBS01000056.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00053.53_C, whole genome shotgun sequence 12,917
NZ_AUBS01000057.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00054.54_C, whole genome shotgun sequence 10,057
NZ_AUBS01000058.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00055.55_C, whole genome shotgun sequence 9,779
NZ_AUBS01000059.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00056.56_C, whole genome shotgun sequence 9,747
NZ_AUBS01000060.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00057.57_C, whole genome shotgun sequence 9,536
NZ_AUBS01000061.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00058.58_C, whole genome shotgun sequence 9,375
NZ_AUBS01000062.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00059.59_C, whole genome shotgun sequence 9,240
NZ_AUBS01000063.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00060.60_C, whole genome shotgun sequence 9,154
NZ_AUBS01000064.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00061.61_C, whole genome shotgun sequence 8,496
NZ_AUBS01000065.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00062.62_C, whole genome shotgun sequence 8,455
NZ_AUBS01000066.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00063.63_C, whole genome shotgun sequence 7,272
NZ_AUBS01000067.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00064.64_C, whole genome shotgun sequence 6,520
NZ_AUBS01000068.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00065.65_C, whole genome shotgun sequence 5,744
NZ_AUBS01000069.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00066.66_C, whole genome shotgun sequence 5,759
NZ_AUBS01000070.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00067.67_C, whole genome shotgun sequence 5,107
NZ_AUBS01000071.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00068.68_C, whole genome shotgun sequence 4,904
NZ_AUBS01000072.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00069.69_C, whole genome shotgun sequence 4,457
NZ_AUBS01000073.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00070.70_C, whole genome shotgun sequence 4,378
NZ_AUBS01000074.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00071.71_C, whole genome shotgun sequence 3,651
NZ_AUBS01000075.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00072.72_C, whole genome shotgun sequence 3,419
NZ_AUBS01000076.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00073.73_C, whole genome shotgun sequence 2,867
NZ_AUBS01000077.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00074.74_C, whole genome shotgun sequence 2,851
NZ_AUBS01000078.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00075.75_C, whole genome shotgun sequence 2,726
NZ_AUBS01000079.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00076.76_C, whole genome shotgun sequence 2,670
NZ_AUBS01000080.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00077.77_C, whole genome shotgun sequence 2,634
NZ_AUBS01000081.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00078.78_C, whole genome shotgun sequence 2,293
NZ_AUBS01000082.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00079.79_C, whole genome shotgun sequence 2,000
NZ_AUBS01000083.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00080.80_C, whole genome shotgun sequence 1,955
NZ_AUBS01000084.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00081.81_C, whole genome shotgun sequence 1,833
NZ_AUBS01000085.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00082.82_C, whole genome shotgun sequence 1,649
NZ_AUBS01000086.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00083.83_C, whole genome shotgun sequence 1,478
NZ_AUBS01000087.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00084.84_C, whole genome shotgun sequence 1,466
NZ_AUBS01000088.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00085.85_C, whole genome shotgun sequence 1,445
NZ_AUBS01000089.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00086.86_C, whole genome shotgun sequence 1,169
NZ_AUBS01000090.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00087.87_C, whole genome shotgun sequence 1,091
NZ_KE386893.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00011.11, whole genome shotgun sequence 109,768
NZ_KE386894.1 Pseudodonghicola xiamenensis DSM 18339 G455DRAFT_scaffold00020.20, whole genome shotgun sequence 64,878

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory