fast.genomicscompare 6,575 genera of bacteria & archaea

 

Cucumibacter marinus DSM 18995

Genome identifier: GCF_000429865.1

NCBI assembly name: ASM42986v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Devosiaceae, Cucumibacter, Cucumibacter marinus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Devosiaceae, Cucumibacter, Cucumibacter marinus

Scaffolds: 22

Genes: 3,602 Protein-coding: 3,525 RNAs: 53 pseudogenes: 24

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_AUCR01000001.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00001.1_C, whole genome shotgun sequence 612,378
NZ_AUCR01000002.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00002.2_C, whole genome shotgun sequence 566,935
NZ_AUCR01000009.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00006.6_C, whole genome shotgun sequence 225,524
NZ_AUCR01000010.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00007.7_C, whole genome shotgun sequence 212,273
NZ_AUCR01000011.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00008.8_C, whole genome shotgun sequence 202,840
NZ_AUCR01000014.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00010.10_C, whole genome shotgun sequence 110,708
NZ_AUCR01000015.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00011.11_C, whole genome shotgun sequence 59,814
NZ_AUCR01000016.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00012.12_C, whole genome shotgun sequence 47,479
NZ_AUCR01000017.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00013.13_C, whole genome shotgun sequence 34,754
NZ_AUCR01000018.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00014.14_C, whole genome shotgun sequence 27,160
NZ_AUCR01000019.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00015.15_C, whole genome shotgun sequence 22,163
NZ_AUCR01000020.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00016.16_C, whole genome shotgun sequence 13,312
NZ_AUCR01000021.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00017.17_C, whole genome shotgun sequence 11,016
NZ_AUCR01000022.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00018.18_C, whole genome shotgun sequence 7,303
NZ_AUCR01000023.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00019.19_C, whole genome shotgun sequence 5,660
NZ_AUCR01000024.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00020.20_C, whole genome shotgun sequence 3,875
NZ_AUCR01000025.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00021.21_C, whole genome shotgun sequence 2,938
NZ_AUCR01000026.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00022.22_C, whole genome shotgun sequence 2,334
NZ_KE386977.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00003.3, whole genome shotgun sequence 524,853
NZ_KE386978.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00004.4, whole genome shotgun sequence 437,622
NZ_KE386979.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00005.5, whole genome shotgun sequence 399,831
NZ_KE386980.1 Cucumibacter marinus DSM 18995 G489DRAFT_scaffold00009.9, whole genome shotgun sequence 182,889

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory