fast.genomicscompare 6,575 genera of bacteria & archaea

 

Sedimentitalea nanhaiensis DSM 24252

Genome identifier: GCF_000473225.1

NCBI assembly name: ASM47322v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Sedimentitalea, Sedimentitalea nanhaiensis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Sedimentitalea, Sedimentitalea nanhaiensis

Scaffolds: 7

Genes: 4,873 Protein-coding: 4,678 RNAs: 58 pseudogenes: 137

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_AXBG01000001.1 Sedimentitalea nanhaiensis DSM 24252 Leina_neu_scaffold_2512211949.1_C, whole genome shotgun sequence 55,854
NZ_AXBG01000002.1 Sedimentitalea nanhaiensis DSM 24252 Leina_neu_scaffold_2512211950.2_C, whole genome shotgun sequence 34,914
NZ_AXBG01000027.1 Sedimentitalea nanhaiensis DSM 24252 Leina_neu_scaffold_2512211953.5_C, whole genome shotgun sequence 60,519
NZ_AXBG01000028.1 Sedimentitalea nanhaiensis DSM 24252 Leina_neu_scaffold_2512211954.6_C, whole genome shotgun sequence 57,777
NZ_KI421508.1 Sedimentitalea nanhaiensis DSM 24252 Leina_neu_scaffold_2512211951.3, whole genome shotgun sequence 92,007
NZ_KI421509.1 Sedimentitalea nanhaiensis DSM 24252 Leina_neu_scaffold_2512211952.4, whole genome shotgun sequence 4,411,177
NZ_KI421510.1 Sedimentitalea nanhaiensis DSM 24252 Leina_neu_scaffold_2512211955.7, whole genome shotgun sequence 236,302

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory