fast.genomicscompare 6,575 genera of bacteria & archaea

 

Helicobacter_B macacae MIT 99-5501

Genome identifier: GCF_000507845.1

NCBI assembly name: Heli_maca_MIT_99-5501_V1

GTDB taxonomy: Bacteria, Campylobacterota, Campylobacteria, Campylobacterales, Helicobacteraceae, Helicobacter_B, Helicobacter_B macacae

NCBI taxonomy: Bacteria, Campylobacterota, Epsilonproteobacteria, Campylobacterales, Helicobacteraceae, Helicobacter, Helicobacter macacae

Scaffolds: 4

Genes: 2,127 Protein-coding: 2,043 RNAs: 48 pseudogenes: 36

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_KI669454.1 Helicobacter macacae MIT 99-5501 addTE-supercont1.1, whole genome shotgun sequence 1,682,603
NZ_KI669455.1 Helicobacter macacae MIT 99-5501 addTE-supercont1.2, whole genome shotgun sequence 553,332
NZ_KI669456.1 Helicobacter macacae MIT 99-5501 addTE-supercont1.3, whole genome shotgun sequence 128,816
NZ_KI669457.1 Helicobacter macacae MIT 99-5501 addTE-supercont1.4, whole genome shotgun sequence 4,777

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory