fast.genomicscompare 6,575 genera of bacteria & archaea

 

P52-10 sp000516555 P52-10

Genome identifier: GCF_000516555.1

NCBI assembly name: P52-10

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Xanthobacteraceae, P52-10, P52-10 sp000516555

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Nitrobacteraceae, Afipia

Scaffolds: 7

Genes: 4,795 Protein-coding: 4,706 RNAs: 54 pseudogenes: 35

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_AZSJ01000001.1 Afipia sp. P52-10 contig000001, whole genome shotgun sequence 147,044
NZ_AZSJ01000002.1 Afipia sp. P52-10 contig000002, whole genome shotgun sequence 145,497
NZ_AZSJ01000003.1 Afipia sp. P52-10 contig000003, whole genome shotgun sequence 2,906,233
NZ_AZSJ01000004.1 Afipia sp. P52-10 contig000004, whole genome shotgun sequence 531,629
NZ_AZSJ01000005.1 Afipia sp. P52-10 contig000005, whole genome shotgun sequence 1,940
NZ_AZSJ01000006.1 Afipia sp. P52-10 contig000006, whole genome shotgun sequence 3,083
NZ_AZSJ01000007.1 Afipia sp. P52-10 contig000007, whole genome shotgun sequence 1,350,098

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory