fast.genomicscompare 6,575 genera of bacteria & archaea

 

HK1 sp000583135 HK1

Genome identifier: GCF_000583135.1

NCBI assembly name: work bench 6.5 assembly of Candidatus Thioalkalivibrio spongium HK1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, HK1, HK1, HK1, HK1 sp000583135

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Chromatiales, Ectothiorhodospiraceae, Thioalkalivibrio

Scaffolds: 114

Genes: 2,732 Protein-coding: 2,646 RNAs: 48 pseudogenes: 38

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JFBG01000001.1 Thioalkalivibrio sp. HK1 contig214, whole genome shotgun sequence 103,536
NZ_JFBG01000002.1 Thioalkalivibrio sp. HK1 contig308, whole genome shotgun sequence 49,975
NZ_JFBG01000003.1 Thioalkalivibrio sp. HK1 contig347, whole genome shotgun sequence 79,705
NZ_JFBG01000004.1 Thioalkalivibrio sp. HK1 contig708, whole genome shotgun sequence 48,584
NZ_JFBG01000005.1 Thioalkalivibrio sp. HK1 contig773, whole genome shotgun sequence 2,657
NZ_JFBG01000006.1 Thioalkalivibrio sp. HK1 contig791, whole genome shotgun sequence 36,993
NZ_JFBG01000007.1 Thioalkalivibrio sp. HK1 contig1218, whole genome shotgun sequence 100,078
NZ_JFBG01000008.1 Thioalkalivibrio sp. HK1 contig1297, whole genome shotgun sequence 71,260
NZ_JFBG01000009.1 Thioalkalivibrio sp. HK1 contig1308, whole genome shotgun sequence 48,403
NZ_JFBG01000010.1 Thioalkalivibrio sp. HK1 contig1351, whole genome shotgun sequence 66,150
NZ_JFBG01000011.1 Thioalkalivibrio sp. HK1 contig1456, whole genome shotgun sequence 125,571
NZ_JFBG01000012.1 Thioalkalivibrio sp. HK1 contig1794, whole genome shotgun sequence 84,161
NZ_JFBG01000013.1 Thioalkalivibrio sp. HK1 contig1864, whole genome shotgun sequence 49,195
NZ_JFBG01000014.1 Thioalkalivibrio sp. HK1 contig1932, whole genome shotgun sequence 68,336
NZ_JFBG01000015.1 Thioalkalivibrio sp. HK1 contig1961, whole genome shotgun sequence 47,328
NZ_JFBG01000016.1 Thioalkalivibrio sp. HK1 contig1983, whole genome shotgun sequence 72,539
NZ_JFBG01000017.1 Thioalkalivibrio sp. HK1 contig2133, whole genome shotgun sequence 13,342
NZ_JFBG01000018.1 Thioalkalivibrio sp. HK1 contig2153, whole genome shotgun sequence 24,165
NZ_JFBG01000019.1 Thioalkalivibrio sp. HK1 contig2576, whole genome shotgun sequence 128,124
NZ_JFBG01000020.1 Thioalkalivibrio sp. HK1 contig2829, whole genome shotgun sequence 47,727
NZ_JFBG01000021.1 Thioalkalivibrio sp. HK1 contig2847, whole genome shotgun sequence 15,978
NZ_JFBG01000022.1 Thioalkalivibrio sp. HK1 contig3061, whole genome shotgun sequence 4,649
NZ_JFBG01000023.1 Thioalkalivibrio sp. HK1 contig3092, whole genome shotgun sequence 107,017
NZ_JFBG01000024.1 Thioalkalivibrio sp. HK1 contig3649, whole genome shotgun sequence 15,959
NZ_JFBG01000025.1 Thioalkalivibrio sp. HK1 contig3650, whole genome shotgun sequence 6,566
NZ_JFBG01000026.1 Thioalkalivibrio sp. HK1 contig3686, whole genome shotgun sequence 26,328
NZ_JFBG01000027.1 Thioalkalivibrio sp. HK1 contig3758, whole genome shotgun sequence 107,029
NZ_JFBG01000028.1 Thioalkalivibrio sp. HK1 contig3805, whole genome shotgun sequence 24,354
NZ_JFBG01000029.1 Thioalkalivibrio sp. HK1 contig3910, whole genome shotgun sequence 543
NZ_JFBG01000030.1 Thioalkalivibrio sp. HK1 contig3965, whole genome shotgun sequence 61,554
NZ_JFBG01000031.1 Thioalkalivibrio sp. HK1 contig4175, whole genome shotgun sequence 11,484
NZ_JFBG01000032.1 Thioalkalivibrio sp. HK1 contig4342, whole genome shotgun sequence 40,514
NZ_JFBG01000033.1 Thioalkalivibrio sp. HK1 contig4663, whole genome shotgun sequence 23,923
NZ_JFBG01000034.1 Thioalkalivibrio sp. HK1 contig4974, whole genome shotgun sequence 11,796
NZ_JFBG01000035.1 Thioalkalivibrio sp. HK1 contig4981, whole genome shotgun sequence 17,572
NZ_JFBG01000036.1 Thioalkalivibrio sp. HK1 contig5055, whole genome shotgun sequence 52,761
NZ_JFBG01000037.1 Thioalkalivibrio sp. HK1 contig5439, whole genome shotgun sequence 34,721
NZ_JFBG01000038.1 Thioalkalivibrio sp. HK1 contig5820, whole genome shotgun sequence 102,695
NZ_JFBG01000039.1 Thioalkalivibrio sp. HK1 contig5991, whole genome shotgun sequence 35,088
NZ_JFBG01000040.1 Thioalkalivibrio sp. HK1 contig6497, whole genome shotgun sequence 55,265
NZ_JFBG01000041.1 Thioalkalivibrio sp. HK1 contig6604, whole genome shotgun sequence 8,017
NZ_JFBG01000042.1 Thioalkalivibrio sp. HK1 contig6605, whole genome shotgun sequence 1,881
NZ_JFBG01000043.1 Thioalkalivibrio sp. HK1 contig7112, whole genome shotgun sequence 14,518
NZ_JFBG01000044.1 Thioalkalivibrio sp. HK1 contig7429, whole genome shotgun sequence 50,579
NZ_JFBG01000045.1 Thioalkalivibrio sp. HK1 contig8037, whole genome shotgun sequence 31,039
NZ_JFBG01000046.1 Thioalkalivibrio sp. HK1 contig8353, whole genome shotgun sequence 46,016
NZ_JFBG01000047.1 Thioalkalivibrio sp. HK1 contig8524, whole genome shotgun sequence 37,358
NZ_JFBG01000048.1 Thioalkalivibrio sp. HK1 contig8525, whole genome shotgun sequence 806
NZ_JFBG01000049.1 Thioalkalivibrio sp. HK1 contig8526, whole genome shotgun sequence 13,993
NZ_JFBG01000050.1 Thioalkalivibrio sp. HK1 contig8527, whole genome shotgun sequence 884
NZ_JFBG01000051.1 Thioalkalivibrio sp. HK1 contig8643, whole genome shotgun sequence 37,425
NZ_JFBG01000052.1 Thioalkalivibrio sp. HK1 contig9016, whole genome shotgun sequence 19,606
NZ_JFBG01000053.1 Thioalkalivibrio sp. HK1 contig9162, whole genome shotgun sequence 46,316
NZ_JFBG01000054.1 Thioalkalivibrio sp. HK1 contig9658, whole genome shotgun sequence 34,219
NZ_JFBG01000055.1 Thioalkalivibrio sp. HK1 contig10194, whole genome shotgun sequence 36,809
NZ_JFBG01000056.1 Thioalkalivibrio sp. HK1 contig10205, whole genome shotgun sequence 52,931
NZ_JFBG01000057.1 Thioalkalivibrio sp. HK1 contig10897, whole genome shotgun sequence 17,516
NZ_JFBG01000058.1 Thioalkalivibrio sp. HK1 contig11517, whole genome shotgun sequence 19,949
NZ_JFBG01000059.1 Thioalkalivibrio sp. HK1 contig12192, whole genome shotgun sequence 51,162
NZ_JFBG01000060.1 Thioalkalivibrio sp. HK1 contig13226, whole genome shotgun sequence 33,841
NZ_JFBG01000061.1 Thioalkalivibrio sp. HK1 contig13477, whole genome shotgun sequence 67,610
NZ_JFBG01000062.1 Thioalkalivibrio sp. HK1 contig14057, whole genome shotgun sequence 17,828
NZ_JFBG01000063.1 Thioalkalivibrio sp. HK1 contig14078, whole genome shotgun sequence 34,158
NZ_JFBG01000064.1 Thioalkalivibrio sp. HK1 contig14169, whole genome shotgun sequence 10,149
NZ_JFBG01000065.1 Thioalkalivibrio sp. HK1 contig14587, whole genome shotgun sequence 24,374
NZ_JFBG01000066.1 Thioalkalivibrio sp. HK1 contig14773, whole genome shotgun sequence 10,685
NZ_JFBG01000067.1 Thioalkalivibrio sp. HK1 contig14984, whole genome shotgun sequence 18,496
NZ_JFBG01000068.1 Thioalkalivibrio sp. HK1 contig15035, whole genome shotgun sequence 4,276
NZ_JFBG01000069.1 Thioalkalivibrio sp. HK1 contig15327, whole genome shotgun sequence 32,476
NZ_JFBG01000070.1 Thioalkalivibrio sp. HK1 contig15555, whole genome shotgun sequence 28,386
NZ_JFBG01000071.1 Thioalkalivibrio sp. HK1 contig16422, whole genome shotgun sequence 11,851
NZ_JFBG01000072.1 Thioalkalivibrio sp. HK1 contig16438, whole genome shotgun sequence 32,473
NZ_JFBG01000073.1 Thioalkalivibrio sp. HK1 contig17202, whole genome shotgun sequence 4,514
NZ_JFBG01000074.1 Thioalkalivibrio sp. HK1 contig17615, whole genome shotgun sequence 23,720
NZ_JFBG01000075.1 Thioalkalivibrio sp. HK1 contig17738, whole genome shotgun sequence 45,736
NZ_JFBG01000076.1 Thioalkalivibrio sp. HK1 contig18012, whole genome shotgun sequence 26,458
NZ_JFBG01000077.1 Thioalkalivibrio sp. HK1 contig19092, whole genome shotgun sequence 37,338
NZ_JFBG01000078.1 Thioalkalivibrio sp. HK1 contig21569, whole genome shotgun sequence 17,844
NZ_JFBG01000079.1 Thioalkalivibrio sp. HK1 contig21622, whole genome shotgun sequence 2,038
NZ_JFBG01000080.1 Thioalkalivibrio sp. HK1 contig21824, whole genome shotgun sequence 50,822
NZ_JFBG01000081.1 Thioalkalivibrio sp. HK1 contig22298, whole genome shotgun sequence 13,867
NZ_JFBG01000082.1 Thioalkalivibrio sp. HK1 contig22443, whole genome shotgun sequence 13,717
NZ_JFBG01000083.1 Thioalkalivibrio sp. HK1 contig22482, whole genome shotgun sequence 65,610
NZ_JFBG01000084.1 Thioalkalivibrio sp. HK1 contig22529, whole genome shotgun sequence 32,638
NZ_JFBG01000085.1 Thioalkalivibrio sp. HK1 contig23340, whole genome shotgun sequence 12,864
NZ_JFBG01000086.1 Thioalkalivibrio sp. HK1 contig24133, whole genome shotgun sequence 29,147
NZ_JFBG01000087.1 Thioalkalivibrio sp. HK1 contig25043, whole genome shotgun sequence 29,775
NZ_JFBG01000088.1 Thioalkalivibrio sp. HK1 contig25239, whole genome shotgun sequence 28,135
NZ_JFBG01000089.1 Thioalkalivibrio sp. HK1 contig25946, whole genome shotgun sequence 2,105
NZ_JFBG01000090.1 Thioalkalivibrio sp. HK1 contig27684, whole genome shotgun sequence 946
NZ_JFBG01000091.1 Thioalkalivibrio sp. HK1 contig27915, whole genome shotgun sequence 15,039
NZ_JFBG01000092.1 Thioalkalivibrio sp. HK1 contig27955, whole genome shotgun sequence 8,843
NZ_JFBG01000093.1 Thioalkalivibrio sp. HK1 contig28008, whole genome shotgun sequence 870
NZ_JFBG01000094.1 Thioalkalivibrio sp. HK1 contig29067, whole genome shotgun sequence 16,022
NZ_JFBG01000095.1 Thioalkalivibrio sp. HK1 contig29344, whole genome shotgun sequence 8,241
NZ_JFBG01000096.1 Thioalkalivibrio sp. HK1 contig30787, whole genome shotgun sequence 12,530
NZ_JFBG01000097.1 Thioalkalivibrio sp. HK1 contig31195, whole genome shotgun sequence 12,552
NZ_JFBG01000098.1 Thioalkalivibrio sp. HK1 contig34188, whole genome shotgun sequence 5,033
NZ_JFBG01000099.1 Thioalkalivibrio sp. HK1 contig34908, whole genome shotgun sequence 2,217
NZ_JFBG01000100.1 Thioalkalivibrio sp. HK1 contig34915, whole genome shotgun sequence 24,779
NZ_JFBG01000101.1 Thioalkalivibrio sp. HK1 contig35827, whole genome shotgun sequence 2,118
NZ_JFBG01000102.1 Thioalkalivibrio sp. HK1 contig36383, whole genome shotgun sequence 18,115
NZ_JFBG01000103.1 Thioalkalivibrio sp. HK1 contig36534, whole genome shotgun sequence 851
NZ_JFBG01000104.1 Thioalkalivibrio sp. HK1 contig36621, whole genome shotgun sequence 8,526
NZ_JFBG01000105.1 Thioalkalivibrio sp. HK1 contig38083, whole genome shotgun sequence 3,874
NZ_JFBG01000106.1 Thioalkalivibrio sp. HK1 contig38533, whole genome shotgun sequence 4,169
NZ_JFBG01000107.1 Thioalkalivibrio sp. HK1 contig43212, whole genome shotgun sequence 1,953
NZ_JFBG01000108.1 Thioalkalivibrio sp. HK1 contig43542, whole genome shotgun sequence 600
NZ_JFBG01000109.1 Thioalkalivibrio sp. HK1 contig44552, whole genome shotgun sequence 1,890
NZ_JFBG01000110.1 Thioalkalivibrio sp. HK1 contig45441, whole genome shotgun sequence 1,119
NZ_JFBG01000111.1 Thioalkalivibrio sp. HK1 contig47191, whole genome shotgun sequence 512
NZ_JFBG01000112.1 Thioalkalivibrio sp. HK1 contig51014, whole genome shotgun sequence 518
NZ_JFBG01000113.1 Thioalkalivibrio sp. HK1 contig53903, whole genome shotgun sequence 546
NZ_JFBG01000114.1 Thioalkalivibrio sp. HK1 contig54514, whole genome shotgun sequence 719

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory