fast.genomicscompare 6,575 genera of bacteria & archaea

 

Limimaricola hongkongensis DSM 17492

Genome identifier: GCF_000600975.2

NCBI assembly name: Lokhon

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Limimaricola, Limimaricola hongkongensis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Limimaricola, Limimaricola hongkongensis

Scaffolds: 8

Genes: 3,171 Protein-coding: 3,042 RNAs: 52 pseudogenes: 77

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_CM002675.1 Limimaricola hongkongensis DSM 17492 plasmid pLokhon01, whole genome shotgun sequence 85,337
NZ_CM002676.1 Limimaricola hongkongensis DSM 17492 plasmid pLokhon02, whole genome shotgun sequence 103,367
NZ_KK088648.1 Limimaricola hongkongensis DSM 17492 Scaffold3, whole genome shotgun sequence 217,591
NZ_KK088649.1 Limimaricola hongkongensis DSM 17492 Scaffold4, whole genome shotgun sequence 531,696
NZ_KK088650.1 Limimaricola hongkongensis DSM 17492 Scaffold5, whole genome shotgun sequence 750,699
NZ_KK088652.1 Limimaricola hongkongensis DSM 17492 Scaffold7, whole genome shotgun sequence 460,232
NZ_KK088653.1 Limimaricola hongkongensis DSM 17492 Scaffold8, whole genome shotgun sequence 1,020,876
NZ_KK088654.1 Limimaricola hongkongensis DSM 17492 Scaffold9, whole genome shotgun sequence 19,042

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory