fast.genomicscompare 6,575 genera of bacteria & archaea

 

Clostridium_AO lundense DSM 17049

Genome identifier: GCF_000619945.1

NCBI assembly name: ASM61994v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Clostridiales, Clostridiaceae, Clostridium_AO, Clostridium_AO lundense

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Clostridiaceae, Clostridium, Clostridium lundense

Scaffolds: 52

Genes: 4,610 Protein-coding: 4,488 RNAs: 80 pseudogenes: 42

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JHVC01000001.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00001.1_C, whole genome shotgun sequence 779,516
NZ_JHVC01000002.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00002.2_C, whole genome shotgun sequence 487,786
NZ_JHVC01000003.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00003.3_C, whole genome shotgun sequence 314,562
NZ_JHVC01000006.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00005.5_C, whole genome shotgun sequence 286,128
NZ_JHVC01000007.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00006.6_C, whole genome shotgun sequence 251,919
NZ_JHVC01000008.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00007.7_C, whole genome shotgun sequence 242,737
NZ_JHVC01000009.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00008.8_C, whole genome shotgun sequence 191,290
NZ_JHVC01000010.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00009.9_C, whole genome shotgun sequence 155,057
NZ_JHVC01000011.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00010.10_C, whole genome shotgun sequence 153,625
NZ_JHVC01000012.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00011.11_C, whole genome shotgun sequence 123,611
NZ_JHVC01000013.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00012.12_C, whole genome shotgun sequence 111,096
NZ_JHVC01000014.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00013.13_C, whole genome shotgun sequence 107,770
NZ_JHVC01000015.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00014.14_C, whole genome shotgun sequence 98,338
NZ_JHVC01000016.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00015.15_C, whole genome shotgun sequence 90,478
NZ_JHVC01000017.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00016.16_C, whole genome shotgun sequence 89,091
NZ_JHVC01000018.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00017.17_C, whole genome shotgun sequence 73,181
NZ_JHVC01000019.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00018.18_C, whole genome shotgun sequence 71,486
NZ_JHVC01000020.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00019.19_C, whole genome shotgun sequence 67,250
NZ_JHVC01000021.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00020.20_C, whole genome shotgun sequence 65,195
NZ_JHVC01000022.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00021.21_C, whole genome shotgun sequence 63,359
NZ_JHVC01000023.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00022.22_C, whole genome shotgun sequence 61,421
NZ_JHVC01000024.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00023.23_C, whole genome shotgun sequence 46,603
NZ_JHVC01000025.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00024.24_C, whole genome shotgun sequence 43,975
NZ_JHVC01000026.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00025.25_C, whole genome shotgun sequence 42,567
NZ_JHVC01000027.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00026.26_C, whole genome shotgun sequence 42,485
NZ_JHVC01000028.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00027.27_C, whole genome shotgun sequence 42,089
NZ_JHVC01000029.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00028.28_C, whole genome shotgun sequence 36,716
NZ_JHVC01000030.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00029.29_C, whole genome shotgun sequence 31,475
NZ_JHVC01000031.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00030.30_C, whole genome shotgun sequence 29,879
NZ_JHVC01000032.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00031.31_C, whole genome shotgun sequence 28,280
NZ_JHVC01000035.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00033.33_C, whole genome shotgun sequence 24,683
NZ_JHVC01000036.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00034.34_C, whole genome shotgun sequence 22,676
NZ_JHVC01000037.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00035.35_C, whole genome shotgun sequence 22,119
NZ_JHVC01000038.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00036.36_C, whole genome shotgun sequence 17,658
NZ_JHVC01000039.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00037.37_C, whole genome shotgun sequence 15,366
NZ_JHVC01000040.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00038.38_C, whole genome shotgun sequence 15,295
NZ_JHVC01000041.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00039.39_C, whole genome shotgun sequence 12,658
NZ_JHVC01000042.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00040.40_C, whole genome shotgun sequence 12,306
NZ_JHVC01000043.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00041.41_C, whole genome shotgun sequence 10,950
NZ_JHVC01000044.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00042.42_C, whole genome shotgun sequence 8,552
NZ_JHVC01000045.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00043.43_C, whole genome shotgun sequence 6,935
NZ_JHVC01000046.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00044.44_C, whole genome shotgun sequence 3,944
NZ_JHVC01000047.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00045.45_C, whole genome shotgun sequence 3,664
NZ_JHVC01000048.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00046.46_C, whole genome shotgun sequence 2,911
NZ_JHVC01000049.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00047.47_C, whole genome shotgun sequence 2,133
NZ_JHVC01000050.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00048.48_C, whole genome shotgun sequence 2,086
NZ_JHVC01000051.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00049.49_C, whole genome shotgun sequence 1,563
NZ_JHVC01000052.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00050.50_C, whole genome shotgun sequence 1,321
NZ_JHVC01000053.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00051.51_C, whole genome shotgun sequence 1,195
NZ_JHVC01000054.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00052.52_C, whole genome shotgun sequence 1,116
NZ_KK211043.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00004.4, whole genome shotgun sequence 310,606
NZ_KK211044.1 Clostridium lundense DSM 17049 T514DRAFT_scaffold00032.32, whole genome shotgun sequence 24,895

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory