fast.genomicscompare 6,575 genera of bacteria & archaea

 

Actibacterium_D atlanticum 22II-S11-z10

Genome identifier: GCF_000671395.1

NCBI assembly name: SOAPdenovo v1.05

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Actibacterium_D, Actibacterium_D atlanticum

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Actibacterium, Actibacterium atlanticum

Scaffolds: 24

Genes: 3,184 Protein-coding: 3,124 RNAs: 50 pseudogenes: 10

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_AQQY01000001.1 Actibacterium atlanticum strain 22II-S11-z10 contig1, whole genome shotgun sequence 785,574
NZ_AQQY01000002.1 Actibacterium atlanticum strain 22II-S11-z10 contig2, whole genome shotgun sequence 368,092
NZ_AQQY01000003.1 Actibacterium atlanticum strain 22II-S11-z10 contig3, whole genome shotgun sequence 292,416
NZ_AQQY01000004.1 Actibacterium atlanticum strain 22II-S11-z10 contig4, whole genome shotgun sequence 279,242
NZ_AQQY01000005.1 Actibacterium atlanticum strain 22II-S11-z10 contig5, whole genome shotgun sequence 275,793
NZ_AQQY01000006.1 Actibacterium atlanticum strain 22II-S11-z10 contig6, whole genome shotgun sequence 243,669
NZ_AQQY01000007.1 Actibacterium atlanticum strain 22II-S11-z10 contig7, whole genome shotgun sequence 199,981
NZ_AQQY01000008.1 Actibacterium atlanticum strain 22II-S11-z10 contig8, whole genome shotgun sequence 114,145
NZ_AQQY01000009.1 Actibacterium atlanticum strain 22II-S11-z10 contig9, whole genome shotgun sequence 113,538
NZ_AQQY01000010.1 Actibacterium atlanticum strain 22II-S11-z10 contig10, whole genome shotgun sequence 112,431
NZ_AQQY01000011.1 Actibacterium atlanticum strain 22II-S11-z10 contig11, whole genome shotgun sequence 82,782
NZ_AQQY01000012.1 Actibacterium atlanticum strain 22II-S11-z10 contig12, whole genome shotgun sequence 76,398
NZ_AQQY01000013.1 Actibacterium atlanticum strain 22II-S11-z10 contig13, whole genome shotgun sequence 69,242
NZ_AQQY01000014.1 Actibacterium atlanticum strain 22II-S11-z10 contig14, whole genome shotgun sequence 55,188
NZ_AQQY01000015.1 Actibacterium atlanticum strain 22II-S11-z10 contig15, whole genome shotgun sequence 36,320
NZ_AQQY01000016.1 Actibacterium atlanticum strain 22II-S11-z10 contig16, whole genome shotgun sequence 27,591
NZ_AQQY01000017.1 Actibacterium atlanticum strain 22II-S11-z10 contig17, whole genome shotgun sequence 19,846
NZ_AQQY01000018.1 Actibacterium atlanticum strain 22II-S11-z10 contig18, whole genome shotgun sequence 9,368
NZ_AQQY01000019.1 Actibacterium atlanticum strain 22II-S11-z10 contig19, whole genome shotgun sequence 5,840
NZ_AQQY01000020.1 Actibacterium atlanticum strain 22II-S11-z10 contig20, whole genome shotgun sequence 3,424
NZ_AQQY01000021.1 Actibacterium atlanticum strain 22II-S11-z10 contig21, whole genome shotgun sequence 1,625
NZ_AQQY01000022.1 Actibacterium atlanticum strain 22II-S11-z10 contig22, whole genome shotgun sequence 1,535
NZ_AQQY01000023.1 Actibacterium atlanticum strain 22II-S11-z10 contig23, whole genome shotgun sequence 1,178
NZ_AQQY01000024.1 Actibacterium atlanticum strain 22II-S11-z10 contig24, whole genome shotgun sequence 1,165

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory