fast.genomicscompare 6,575 genera of bacteria & archaea

 

Hyphomonas polymorpha PS728

Genome identifier: GCF_000685315.1

NCBI assembly name: SOAPdenovo v1.05

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Caulobacterales, Hyphomonadaceae, Hyphomonas, Hyphomonas polymorpha

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomonadales, Hyphomonadaceae, Hyphomonas, Hyphomonas polymorpha

Scaffolds: 71

Genes: 3,906 Protein-coding: 3,827 RNAs: 47 pseudogenes: 32

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_ARYM01000001.1 Hyphomonas polymorpha PS728 contig1, whole genome shotgun sequence 326,971
NZ_ARYM01000002.1 Hyphomonas polymorpha PS728 contig2, whole genome shotgun sequence 275,240
NZ_ARYM01000003.1 Hyphomonas polymorpha PS728 contig3, whole genome shotgun sequence 265,104
NZ_ARYM01000004.1 Hyphomonas polymorpha PS728 contig4, whole genome shotgun sequence 259,858
NZ_ARYM01000005.1 Hyphomonas polymorpha PS728 contig5, whole genome shotgun sequence 195,706
NZ_ARYM01000006.1 Hyphomonas polymorpha PS728 contig6, whole genome shotgun sequence 186,988
NZ_ARYM01000007.1 Hyphomonas polymorpha PS728 contig7, whole genome shotgun sequence 185,994
NZ_ARYM01000008.1 Hyphomonas polymorpha PS728 contig8, whole genome shotgun sequence 165,840
NZ_ARYM01000009.1 Hyphomonas polymorpha PS728 contig9, whole genome shotgun sequence 161,706
NZ_ARYM01000010.1 Hyphomonas polymorpha PS728 contig10, whole genome shotgun sequence 154,438
NZ_ARYM01000011.1 Hyphomonas polymorpha PS728 contig11, whole genome shotgun sequence 152,903
NZ_ARYM01000012.1 Hyphomonas polymorpha PS728 contig12, whole genome shotgun sequence 138,025
NZ_ARYM01000013.1 Hyphomonas polymorpha PS728 contig13, whole genome shotgun sequence 134,292
NZ_ARYM01000014.1 Hyphomonas polymorpha PS728 contig14, whole genome shotgun sequence 99,563
NZ_ARYM01000015.1 Hyphomonas polymorpha PS728 contig15, whole genome shotgun sequence 97,913
NZ_ARYM01000016.1 Hyphomonas polymorpha PS728 contig16, whole genome shotgun sequence 91,372
NZ_ARYM01000017.1 Hyphomonas polymorpha PS728 contig17, whole genome shotgun sequence 87,501
NZ_ARYM01000018.1 Hyphomonas polymorpha PS728 contig18, whole genome shotgun sequence 81,560
NZ_ARYM01000019.1 Hyphomonas polymorpha PS728 contig19, whole genome shotgun sequence 73,285
NZ_ARYM01000020.1 Hyphomonas polymorpha PS728 contig20, whole genome shotgun sequence 67,905
NZ_ARYM01000021.1 Hyphomonas polymorpha PS728 contig21, whole genome shotgun sequence 62,368
NZ_ARYM01000022.1 Hyphomonas polymorpha PS728 contig22, whole genome shotgun sequence 61,950
NZ_ARYM01000023.1 Hyphomonas polymorpha PS728 contig23, whole genome shotgun sequence 56,310
NZ_ARYM01000024.1 Hyphomonas polymorpha PS728 contig24, whole genome shotgun sequence 55,281
NZ_ARYM01000025.1 Hyphomonas polymorpha PS728 contig25, whole genome shotgun sequence 48,425
NZ_ARYM01000026.1 Hyphomonas polymorpha PS728 contig26, whole genome shotgun sequence 45,873
NZ_ARYM01000027.1 Hyphomonas polymorpha PS728 contig27, whole genome shotgun sequence 42,956
NZ_ARYM01000028.1 Hyphomonas polymorpha PS728 contig28, whole genome shotgun sequence 40,143
NZ_ARYM01000029.1 Hyphomonas polymorpha PS728 contig29, whole genome shotgun sequence 39,831
NZ_ARYM01000030.1 Hyphomonas polymorpha PS728 contig30, whole genome shotgun sequence 39,618
NZ_ARYM01000031.1 Hyphomonas polymorpha PS728 contig31, whole genome shotgun sequence 39,191
NZ_ARYM01000032.1 Hyphomonas polymorpha PS728 contig32, whole genome shotgun sequence 39,028
NZ_ARYM01000033.1 Hyphomonas polymorpha PS728 contig33, whole genome shotgun sequence 36,412
NZ_ARYM01000034.1 Hyphomonas polymorpha PS728 contig34, whole genome shotgun sequence 34,957
NZ_ARYM01000035.1 Hyphomonas polymorpha PS728 contig35, whole genome shotgun sequence 23,020
NZ_ARYM01000036.1 Hyphomonas polymorpha PS728 contig36, whole genome shotgun sequence 19,740
NZ_ARYM01000037.1 Hyphomonas polymorpha PS728 contig37, whole genome shotgun sequence 17,540
NZ_ARYM01000038.1 Hyphomonas polymorpha PS728 contig38, whole genome shotgun sequence 14,737
NZ_ARYM01000039.1 Hyphomonas polymorpha PS728 contig39, whole genome shotgun sequence 14,526
NZ_ARYM01000040.1 Hyphomonas polymorpha PS728 contig40, whole genome shotgun sequence 13,735
NZ_ARYM01000041.1 Hyphomonas polymorpha PS728 contig41, whole genome shotgun sequence 13,353
NZ_ARYM01000042.1 Hyphomonas polymorpha PS728 contig42, whole genome shotgun sequence 13,011
NZ_ARYM01000043.1 Hyphomonas polymorpha PS728 contig43, whole genome shotgun sequence 12,305
NZ_ARYM01000044.1 Hyphomonas polymorpha PS728 contig44, whole genome shotgun sequence 12,000
NZ_ARYM01000045.1 Hyphomonas polymorpha PS728 contig45, whole genome shotgun sequence 11,884
NZ_ARYM01000046.1 Hyphomonas polymorpha PS728 contig46, whole genome shotgun sequence 6,493
NZ_ARYM01000047.1 Hyphomonas polymorpha PS728 contig47, whole genome shotgun sequence 4,618
NZ_ARYM01000048.1 Hyphomonas polymorpha PS728 contig48, whole genome shotgun sequence 2,907
NZ_ARYM01000049.1 Hyphomonas polymorpha PS728 contig49, whole genome shotgun sequence 2,635
NZ_ARYM01000050.1 Hyphomonas polymorpha PS728 contig50, whole genome shotgun sequence 2,291
NZ_ARYM01000051.1 Hyphomonas polymorpha PS728 contig51, whole genome shotgun sequence 2,001
NZ_ARYM01000052.1 Hyphomonas polymorpha PS728 contig52, whole genome shotgun sequence 1,963
NZ_ARYM01000053.1 Hyphomonas polymorpha PS728 contig53, whole genome shotgun sequence 1,796
NZ_ARYM01000054.1 Hyphomonas polymorpha PS728 contig54, whole genome shotgun sequence 1,504
NZ_ARYM01000055.1 Hyphomonas polymorpha PS728 contig55, whole genome shotgun sequence 1,472
NZ_ARYM01000056.1 Hyphomonas polymorpha PS728 contig56, whole genome shotgun sequence 1,431
NZ_ARYM01000057.1 Hyphomonas polymorpha PS728 contig57, whole genome shotgun sequence 1,305
NZ_ARYM01000058.1 Hyphomonas polymorpha PS728 contig58, whole genome shotgun sequence 1,204
NZ_ARYM01000059.1 Hyphomonas polymorpha PS728 contig59, whole genome shotgun sequence 1,146
NZ_ARYM01000060.1 Hyphomonas polymorpha PS728 contig60, whole genome shotgun sequence 1,013
NZ_ARYM01000061.1 Hyphomonas polymorpha PS728 contig61, whole genome shotgun sequence 921
NZ_ARYM01000062.1 Hyphomonas polymorpha PS728 contig62, whole genome shotgun sequence 828
NZ_ARYM01000063.1 Hyphomonas polymorpha PS728 contig63, whole genome shotgun sequence 806
NZ_ARYM01000064.1 Hyphomonas polymorpha PS728 contig64, whole genome shotgun sequence 738
NZ_ARYM01000065.1 Hyphomonas polymorpha PS728 contig65, whole genome shotgun sequence 616
NZ_ARYM01000066.1 Hyphomonas polymorpha PS728 contig66, whole genome shotgun sequence 530
NZ_ARYM01000067.1 Hyphomonas polymorpha PS728 contig67, whole genome shotgun sequence 530
NZ_ARYM01000068.1 Hyphomonas polymorpha PS728 contig68, whole genome shotgun sequence 530
NZ_ARYM01000069.1 Hyphomonas polymorpha PS728 contig69, whole genome shotgun sequence 524
NZ_ARYM01000070.1 Hyphomonas polymorpha PS728 contig70, whole genome shotgun sequence 447
NZ_ARYM01000071.1 Hyphomonas polymorpha PS728 contig71, whole genome shotgun sequence 350

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory