fast.genomicscompare 6,575 genera of bacteria & archaea

 

Clostridium_R aminophilum DSM 10710

Genome identifier: GCF_000711825.1

NCBI assembly name: ASM71182v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, Clostridium_R, Clostridium_R aminophilum

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Lachnospiraceae, Lachnoclostridium, [Clostridium] aminophilum

Scaffolds: 36

Genes: 2,653 Protein-coding: 2,537 RNAs: 71 pseudogenes: 45

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JONJ01000001.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00001.1_C, whole genome shotgun sequence 437,111
NZ_JONJ01000002.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00002.2_C, whole genome shotgun sequence 325,468
NZ_JONJ01000003.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00003.3_C, whole genome shotgun sequence 312,944
NZ_JONJ01000004.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00004.4_C, whole genome shotgun sequence 184,641
NZ_JONJ01000007.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00006.6_C, whole genome shotgun sequence 176,585
NZ_JONJ01000008.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00007.7_C, whole genome shotgun sequence 171,458
NZ_JONJ01000009.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00008.8_C, whole genome shotgun sequence 149,591
NZ_JONJ01000010.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00009.9_C, whole genome shotgun sequence 147,563
NZ_JONJ01000011.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00010.10_C, whole genome shotgun sequence 135,092
NZ_JONJ01000012.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00011.11_C, whole genome shotgun sequence 125,529
NZ_JONJ01000013.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00012.12_C, whole genome shotgun sequence 103,271
NZ_JONJ01000014.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00013.13_C, whole genome shotgun sequence 99,711
NZ_JONJ01000015.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00014.14_C, whole genome shotgun sequence 88,578
NZ_JONJ01000016.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00015.15_C, whole genome shotgun sequence 81,963
NZ_JONJ01000017.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00016.16_C, whole genome shotgun sequence 71,526
NZ_JONJ01000018.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00017.17_C, whole genome shotgun sequence 42,875
NZ_JONJ01000019.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00018.18_C, whole genome shotgun sequence 40,736
NZ_JONJ01000020.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00019.19_C, whole genome shotgun sequence 37,754
NZ_JONJ01000021.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00020.20_C, whole genome shotgun sequence 33,003
NZ_JONJ01000022.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00021.21_C, whole genome shotgun sequence 28,044
NZ_JONJ01000023.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00022.22_C, whole genome shotgun sequence 24,096
NZ_JONJ01000024.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00023.23_C, whole genome shotgun sequence 20,840
NZ_JONJ01000025.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00024.24_C, whole genome shotgun sequence 18,194
NZ_JONJ01000026.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00025.25_C, whole genome shotgun sequence 14,418
NZ_JONJ01000027.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00026.26_C, whole genome shotgun sequence 13,173
NZ_JONJ01000028.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00027.27_C, whole genome shotgun sequence 10,564
NZ_JONJ01000029.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00028.28_C, whole genome shotgun sequence 9,315
NZ_JONJ01000030.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00029.29_C, whole genome shotgun sequence 6,347
NZ_JONJ01000031.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00030.30_C, whole genome shotgun sequence 5,870
NZ_JONJ01000032.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00031.31_C, whole genome shotgun sequence 5,777
NZ_JONJ01000033.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00032.32_C, whole genome shotgun sequence 3,612
NZ_JONJ01000034.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00033.33_C, whole genome shotgun sequence 2,900
NZ_JONJ01000035.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00034.34_C, whole genome shotgun sequence 2,127
NZ_JONJ01000036.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00035.35_C, whole genome shotgun sequence 1,942
NZ_JONJ01000037.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00036.36_C, whole genome shotgun sequence 1,876
NZ_KL543982.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00005.5, whole genome shotgun sequence 179,922

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory