fast.genomicscompare 6,575 genera of bacteria & archaea

 

Methylomicrobium agile ATCC 35068

Genome identifier: GCF_000733855.1

NCBI assembly name: ASM73385v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Methylococcales, Methylomonadaceae, Methylomicrobium, Methylomicrobium agile

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Methylococcales, Methylococcaceae, Methylomicrobium, Methylomicrobium agile

Scaffolds: 4

Genes: 4,104 Protein-coding: 3,958 RNAs: 62 pseudogenes: 84

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JPOJ01000001.1 Methylomicrobium agile strain ATCC 35068 CC94DRAFT_scf7180000000008_quiver_quiver.1_C, whole genome shotgun sequence 4,431,305
NZ_JPOJ01000002.1 Methylomicrobium agile strain ATCC 35068 CC94DRAFT_scf7180000000009_quiver_quiver.2_C, whole genome shotgun sequence 14,398
NZ_JPOJ01000003.1 Methylomicrobium agile strain ATCC 35068 CC94DRAFT_scf7180000000010_quiver_quiver.3_C, whole genome shotgun sequence 13,378
NZ_JPOJ01000004.1 Methylomicrobium agile strain ATCC 35068 CC94DRAFT_deg7180000000007_quiver.4_C, whole genome shotgun sequence 66,990

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory