fast.genomicscompare 6,575 genera of bacteria & archaea

 

Hepatobacter penaei NHPB

Genome identifier: GCF_000742475.1

NCBI assembly name: ASM74247v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Holosporales_A, Hepatobacteraceae, Hepatobacter, Hepatobacter penaei

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rickettsiales, Candidatus Hepatobacter, Candidatus Hepatobacter penaei

Scaffolds: 5

Genes: 1,066 Protein-coding: 1,005 RNAs: 51 pseudogenes: 10

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JQAJ01000001.1 Candidatus Hepatobacter penaei strain NHPB Scaffold_1, whole genome shotgun sequence 334,235
NZ_JQAJ01000002.1 Candidatus Hepatobacter penaei strain NHPB Scaffold_2, whole genome shotgun sequence 376,171
NZ_JQAJ01000003.1 Candidatus Hepatobacter penaei strain NHPB Scaffold_3, whole genome shotgun sequence 284,661
NZ_JQAJ01000004.1 Candidatus Hepatobacter penaei strain NHPB Scaffold_4, whole genome shotgun sequence 67,728
NZ_JQAJ01000005.1 Candidatus Hepatobacter penaei strain NHPB Scaffold_5, whole genome shotgun sequence 52,814

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory