fast.genomicscompare 6,575 genera of bacteria & archaea

 

Methanobacterium_D veterum MK4

Genome identifier: GCF_000745485.1

NCBI assembly name: ASM74548v1

GTDB taxonomy: Archaea, Methanobacteriota, Methanobacteria, Methanobacteriales, Methanobacteriaceae, Methanobacterium_D, Methanobacterium_D veterum

NCBI taxonomy: Archaea, Euryarchaeota, Methanobacteria, Methanobacteriales, Methanobacteriaceae, Methanobacterium, Methanobacterium veterum

Scaffolds: 13

Genes: 3,321 Protein-coding: 3,259 RNAs: 48 pseudogenes: 14

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JQJK01000001.1 Methanobacterium veterum strain MK4 EJ01DRAFT_scaffold00010.10_C, whole genome shotgun sequence 1,397
NZ_JQJK01000002.1 Methanobacterium veterum strain MK4 EJ01DRAFT_scaffold00011.11_C, whole genome shotgun sequence 1,318
NZ_JQJK01000003.1 Methanobacterium veterum strain MK4 EJ01DRAFT_scaffold00012.12_C, whole genome shotgun sequence 1,048
NZ_JQJK01000004.1 Methanobacterium veterum strain MK4 EJ01DRAFT_scaffold00013.13_C, whole genome shotgun sequence 1,015
NZ_JQJK01000008.1 Methanobacterium veterum strain MK4 EJ01DRAFT_scaffold00002.2_C, whole genome shotgun sequence 692,001
NZ_JQJK01000009.1 Methanobacterium veterum strain MK4 EJ01DRAFT_scaffold00003.3_C, whole genome shotgun sequence 577,892
NZ_JQJK01000014.1 Methanobacterium veterum strain MK4 EJ01DRAFT_scaffold00005.5_C, whole genome shotgun sequence 271,855
NZ_JQJK01000015.1 Methanobacterium veterum strain MK4 EJ01DRAFT_scaffold00006.6_C, whole genome shotgun sequence 260,578
NZ_JQJK01000016.1 Methanobacterium veterum strain MK4 EJ01DRAFT_scaffold00007.7_C, whole genome shotgun sequence 193,998
NZ_JQJK01000017.1 Methanobacterium veterum strain MK4 EJ01DRAFT_scaffold00008.8_C, whole genome shotgun sequence 99,615
NZ_JQJK01000018.1 Methanobacterium veterum strain MK4 EJ01DRAFT_scaffold00009.9_C, whole genome shotgun sequence 1,780
NZ_KN050693.1 Methanobacterium veterum strain MK4 EJ01DRAFT_scaffold00001.1, whole genome shotgun sequence 764,182
NZ_KN050694.1 Methanobacterium veterum strain MK4 EJ01DRAFT_scaffold00004.4, whole genome shotgun sequence 502,876

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory