fast.genomicscompare 6,575 genera of bacteria & archaea

 

Thermopetrobacter sp000746275 TC-1

Genome identifier: GCF_000746275.1

NCBI assembly name: ASM74627v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Aestuariivirgaceae, Thermopetrobacter, Thermopetrobacter sp000746275

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Thermopetrobacter

Scaffolds: 19

Genes: 2,262 Protein-coding: 2,185 RNAs: 52 pseudogenes: 25

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JQKX01000001.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00010.10_C, whole genome shotgun sequence 57,630
NZ_JQKX01000002.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00011.11_C, whole genome shotgun sequence 48,760
NZ_JQKX01000003.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00012.12_C, whole genome shotgun sequence 36,871
NZ_JQKX01000004.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00013.13_C, whole genome shotgun sequence 33,678
NZ_JQKX01000005.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00014.14_C, whole genome shotgun sequence 26,606
NZ_JQKX01000006.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00015.15_C, whole genome shotgun sequence 19,150
NZ_JQKX01000007.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00016.16_C, whole genome shotgun sequence 13,648
NZ_JQKX01000008.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00017.17_C, whole genome shotgun sequence 13,321
NZ_JQKX01000009.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00018.18_C, whole genome shotgun sequence 11,964
NZ_JQKX01000010.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00019.19_C, whole genome shotgun sequence 7,497
NZ_JQKX01000013.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00002.2_C, whole genome shotgun sequence 258,231
NZ_JQKX01000020.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00005.5_C, whole genome shotgun sequence 166,171
NZ_JQKX01000021.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00006.6_C, whole genome shotgun sequence 126,529
NZ_JQKX01000026.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00009.9_C, whole genome shotgun sequence 77,689
NZ_KN050828.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00001.1, whole genome shotgun sequence 1,068,663
NZ_KN050829.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00003.3, whole genome shotgun sequence 239,826
NZ_KN050830.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00004.4, whole genome shotgun sequence 201,036
NZ_KN050831.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00007.7, whole genome shotgun sequence 120,994
NZ_KN050832.1 Thermopetrobacter sp. TC1 strain TC-1 EK16DRAFT_scaffold00008.8, whole genome shotgun sequence 80,659

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory