fast.genomicscompare 6,575 genera of bacteria & archaea

 

Paracaedibacter_A symbiosus PRA9

Genome identifier: GCF_000757605.1

NCBI assembly name: ASM75760v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Paracaedibacterales, Paracaedibacteraceae, Paracaedibacter_A, Paracaedibacter_A symbiosus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Holosporales, Candidatus Paracaedibacteraceae, Candidatus Paracaedibacter, Candidatus Paracaedibacter symbiosus

Scaffolds: 50

Genes: 2,508 Protein-coding: 2,332 RNAs: 69 pseudogenes: 107

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JQAK01000001.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_1, whole genome shotgun sequence 1,684,892
NZ_JQAK01000002.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_2, whole genome shotgun sequence 161,885
NZ_JQAK01000003.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_3, whole genome shotgun sequence 60,844
NZ_JQAK01000004.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_4, whole genome shotgun sequence 327,788
NZ_JQAK01000005.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_5, whole genome shotgun sequence 115,424
NZ_JQAK01000006.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_6, whole genome shotgun sequence 54,872
NZ_JQAK01000007.1 Candidatus Paracaedibacter symbiosus strain PRA9 plasmid pCPS01, whole genome shotgun sequence 40,599
NZ_JQAK01000008.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_8, whole genome shotgun sequence 24,494
NZ_JQAK01000009.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_9, whole genome shotgun sequence 19,877
NZ_JQAK01000010.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_10, whole genome shotgun sequence 39,783
NZ_JQAK01000011.1 Candidatus Paracaedibacter symbiosus strain PRA9 plasmid pCPS02, whole genome shotgun sequence 17,806
NZ_JQAK01000012.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_12, whole genome shotgun sequence 10,760
NZ_JQAK01000013.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_13, whole genome shotgun sequence 11,556
NZ_JQAK01000014.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_14, whole genome shotgun sequence 5,656
NZ_JQAK01000015.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_15, whole genome shotgun sequence 7,690
NZ_JQAK01000016.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_16, whole genome shotgun sequence 6,983
NZ_JQAK01000017.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_17, whole genome shotgun sequence 5,447
NZ_JQAK01000018.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_18, whole genome shotgun sequence 5,149
NZ_JQAK01000019.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_19, whole genome shotgun sequence 5,029
NZ_JQAK01000020.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_20, whole genome shotgun sequence 4,747
NZ_JQAK01000021.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_21, whole genome shotgun sequence 4,175
NZ_JQAK01000022.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_22, whole genome shotgun sequence 4,878
NZ_JQAK01000023.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_23, whole genome shotgun sequence 4,730
NZ_JQAK01000024.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_24, whole genome shotgun sequence 3,465
NZ_JQAK01000025.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_25, whole genome shotgun sequence 4,087
NZ_JQAK01000026.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_26, whole genome shotgun sequence 4,580
NZ_JQAK01000027.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_27, whole genome shotgun sequence 3,640
NZ_JQAK01000028.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_28, whole genome shotgun sequence 4,043
NZ_JQAK01000029.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_29, whole genome shotgun sequence 3,827
NZ_JQAK01000030.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_30, whole genome shotgun sequence 4,036
NZ_JQAK01000031.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_31, whole genome shotgun sequence 3,359
NZ_JQAK01000032.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_32, whole genome shotgun sequence 3,434
NZ_JQAK01000033.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_33, whole genome shotgun sequence 4,435
NZ_JQAK01000034.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_34, whole genome shotgun sequence 4,095
NZ_JQAK01000035.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_35, whole genome shotgun sequence 3,128
NZ_JQAK01000036.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_36, whole genome shotgun sequence 3,152
NZ_JQAK01000037.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_37, whole genome shotgun sequence 3,378
NZ_JQAK01000038.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_38, whole genome shotgun sequence 3,542
NZ_JQAK01000039.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_39, whole genome shotgun sequence 3,800
NZ_JQAK01000040.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_40, whole genome shotgun sequence 3,655
NZ_JQAK01000041.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_41, whole genome shotgun sequence 3,673
NZ_JQAK01000042.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_42, whole genome shotgun sequence 2,939
NZ_JQAK01000043.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_43, whole genome shotgun sequence 3,103
NZ_JQAK01000044.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_44, whole genome shotgun sequence 3,173
NZ_JQAK01000045.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_45, whole genome shotgun sequence 5,219
NZ_JQAK01000046.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_46, whole genome shotgun sequence 3,058
NZ_JQAK01000047.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_47, whole genome shotgun sequence 2,640
NZ_JQAK01000048.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_48, whole genome shotgun sequence 3,449
NZ_JQAK01000049.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_49, whole genome shotgun sequence 2,396
NZ_JQAK01000050.1 Candidatus Paracaedibacter symbiosus strain PRA9 Scaffold_50, whole genome shotgun sequence 2,035

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory