fast.genomicscompare 6,575 genera of bacteria & archaea

 

Spirochaeta_D lutea JC230

Genome identifier: GCF_000758165.1

NCBI assembly name: Spiroch1.0

GTDB taxonomy: Bacteria, Spirochaetota, Spirochaetia, DSM-27196, Salinispiraceae, Spirochaeta_D, Spirochaeta_D lutea

NCBI taxonomy: Bacteria, Spirochaetota, Spirochaetia, Spirochaetales, Spirochaetaceae, Spirochaeta, Spirochaeta lutea

Scaffolds: 72

Genes: 2,992 Protein-coding: 2,917 RNAs: 61 pseudogenes: 14

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JNUP01000001.1 Spirochaeta lutea strain JC230 contig71, whole genome shotgun sequence 104,476
NZ_JNUP01000002.1 Spirochaeta lutea strain JC230 contig108, whole genome shotgun sequence 1,868
NZ_JNUP01000003.1 Spirochaeta lutea strain JC230 contig140, whole genome shotgun sequence 348,628
NZ_JNUP01000004.1 Spirochaeta lutea strain JC230 contig151, whole genome shotgun sequence 4,657
NZ_JNUP01000005.1 Spirochaeta lutea strain JC230 contig176, whole genome shotgun sequence 214
NZ_JNUP01000006.1 Spirochaeta lutea strain JC230 contig211, whole genome shotgun sequence 229
NZ_JNUP01000007.1 Spirochaeta lutea strain JC230 contig219, whole genome shotgun sequence 3,494
NZ_JNUP01000008.1 Spirochaeta lutea strain JC230 contig225, whole genome shotgun sequence 437
NZ_JNUP01000009.1 Spirochaeta lutea strain JC230 contig319, whole genome shotgun sequence 1,468
NZ_JNUP01000010.1 Spirochaeta lutea strain JC230 contig410, whole genome shotgun sequence 260
NZ_JNUP01000011.1 Spirochaeta lutea strain JC230 contig483, whole genome shotgun sequence 651
NZ_JNUP01000012.1 Spirochaeta lutea strain JC230 contig494, whole genome shotgun sequence 205
NZ_JNUP01000013.1 Spirochaeta lutea strain JC230 contig620, whole genome shotgun sequence 380
NZ_JNUP01000014.1 Spirochaeta lutea strain JC230 contig649, whole genome shotgun sequence 930
NZ_JNUP01000015.1 Spirochaeta lutea strain JC230 contig665, whole genome shotgun sequence 287
NZ_JNUP01000016.1 Spirochaeta lutea strain JC230 contig686, whole genome shotgun sequence 3,006
NZ_JNUP01000017.1 Spirochaeta lutea strain JC230 contig721, whole genome shotgun sequence 325
NZ_JNUP01000018.1 Spirochaeta lutea strain JC230 contig736, whole genome shotgun sequence 612
NZ_JNUP01000019.1 Spirochaeta lutea strain JC230 contig752, whole genome shotgun sequence 1,226
NZ_JNUP01000020.1 Spirochaeta lutea strain JC230 contig757, whole genome shotgun sequence 343
NZ_JNUP01000021.1 Spirochaeta lutea strain JC230 contig791, whole genome shotgun sequence 221
NZ_JNUP01000022.1 Spirochaeta lutea strain JC230 contig808, whole genome shotgun sequence 2,305
NZ_JNUP01000023.1 Spirochaeta lutea strain JC230 contig809, whole genome shotgun sequence 230,068
NZ_JNUP01000024.1 Spirochaeta lutea strain JC230 contig810, whole genome shotgun sequence 34,115
NZ_JNUP01000025.1 Spirochaeta lutea strain JC230 contig811, whole genome shotgun sequence 4,325
NZ_JNUP01000026.1 Spirochaeta lutea strain JC230 contig812, whole genome shotgun sequence 259
NZ_JNUP01000027.1 Spirochaeta lutea strain JC230 contig813, whole genome shotgun sequence 46,400
NZ_JNUP01000028.1 Spirochaeta lutea strain JC230 contig814, whole genome shotgun sequence 2,648
NZ_JNUP01000029.1 Spirochaeta lutea strain JC230 contig815, whole genome shotgun sequence 107,387
NZ_JNUP01000030.1 Spirochaeta lutea strain JC230 contig816, whole genome shotgun sequence 2,330
NZ_JNUP01000031.1 Spirochaeta lutea strain JC230 contig817, whole genome shotgun sequence 110,280
NZ_JNUP01000032.1 Spirochaeta lutea strain JC230 contig818, whole genome shotgun sequence 1,026
NZ_JNUP01000033.1 Spirochaeta lutea strain JC230 contig819, whole genome shotgun sequence 1,390
NZ_JNUP01000034.1 Spirochaeta lutea strain JC230 contig820, whole genome shotgun sequence 2,343
NZ_JNUP01000035.1 Spirochaeta lutea strain JC230 contig822, whole genome shotgun sequence 4,055
NZ_JNUP01000036.1 Spirochaeta lutea strain JC230 contig823, whole genome shotgun sequence 2,423
NZ_JNUP01000037.1 Spirochaeta lutea strain JC230 contig824, whole genome shotgun sequence 4,476
NZ_JNUP01000038.1 Spirochaeta lutea strain JC230 contig827, whole genome shotgun sequence 6,623
NZ_JNUP01000039.1 Spirochaeta lutea strain JC230 contig833, whole genome shotgun sequence 546
NZ_JNUP01000040.1 Spirochaeta lutea strain JC230 contig837, whole genome shotgun sequence 14,013
NZ_JNUP01000041.1 Spirochaeta lutea strain JC230 contig838, whole genome shotgun sequence 32,699
NZ_JNUP01000042.1 Spirochaeta lutea strain JC230 contig841, whole genome shotgun sequence 6,551
NZ_JNUP01000043.1 Spirochaeta lutea strain JC230 contig842, whole genome shotgun sequence 1,217
NZ_JNUP01000044.1 Spirochaeta lutea strain JC230 contig843, whole genome shotgun sequence 2,594
NZ_JNUP01000045.1 Spirochaeta lutea strain JC230 contig845, whole genome shotgun sequence 106,893
NZ_JNUP01000046.1 Spirochaeta lutea strain JC230 contig846, whole genome shotgun sequence 5,393
NZ_JNUP01000047.1 Spirochaeta lutea strain JC230 contig849, whole genome shotgun sequence 72,621
NZ_JNUP01000048.1 Spirochaeta lutea strain JC230 contig851, whole genome shotgun sequence 112,904
NZ_JNUP01000049.1 Spirochaeta lutea strain JC230 contig852, whole genome shotgun sequence 167,705
NZ_JNUP01000050.1 Spirochaeta lutea strain JC230 contig858, whole genome shotgun sequence 1,601
NZ_JNUP01000051.1 Spirochaeta lutea strain JC230 contig859, whole genome shotgun sequence 3,870
NZ_JNUP01000052.1 Spirochaeta lutea strain JC230 contig861, whole genome shotgun sequence 110,403
NZ_JNUP01000053.1 Spirochaeta lutea strain JC230 contig862, whole genome shotgun sequence 3,384
NZ_JNUP01000054.1 Spirochaeta lutea strain JC230 contig863, whole genome shotgun sequence 3,314
NZ_JNUP01000055.1 Spirochaeta lutea strain JC230 contig864, whole genome shotgun sequence 5,572
NZ_JNUP01000056.1 Spirochaeta lutea strain JC230 contig865, whole genome shotgun sequence 11,296
NZ_JNUP01000057.1 Spirochaeta lutea strain JC230 contig866, whole genome shotgun sequence 1,287
NZ_JNUP01000058.1 Spirochaeta lutea strain JC230 contig867, whole genome shotgun sequence 1,713
NZ_JNUP01000059.1 Spirochaeta lutea strain JC230 contig868, whole genome shotgun sequence 37,169
NZ_JNUP01000060.1 Spirochaeta lutea strain JC230 contig869, whole genome shotgun sequence 31,244
NZ_JNUP01000061.1 Spirochaeta lutea strain JC230 contig870, whole genome shotgun sequence 2,251
NZ_JNUP01000062.1 Spirochaeta lutea strain JC230 contig871, whole genome shotgun sequence 6,882
NZ_JNUP01000063.1 Spirochaeta lutea strain JC230 contig872, whole genome shotgun sequence 117,462
NZ_JNUP01000064.1 Spirochaeta lutea strain JC230 contig873, whole genome shotgun sequence 269,826
NZ_JNUP01000065.1 Spirochaeta lutea strain JC230 contig874, whole genome shotgun sequence 360,151
NZ_JNUP01000066.1 Spirochaeta lutea strain JC230 contig875, whole genome shotgun sequence 221,853
NZ_JNUP01000067.1 Spirochaeta lutea strain JC230 contig876, whole genome shotgun sequence 165,305
NZ_JNUP01000068.1 Spirochaeta lutea strain JC230 contig877, whole genome shotgun sequence 1,894
NZ_JNUP01000069.1 Spirochaeta lutea strain JC230 contig878, whole genome shotgun sequence 76,894
NZ_JNUP01000070.1 Spirochaeta lutea strain JC230 contig879, whole genome shotgun sequence 23,996
NZ_JNUP01000071.1 Spirochaeta lutea strain JC230 contig880, whole genome shotgun sequence 221,765
NZ_JNUP01000072.1 Spirochaeta lutea strain JC230 contig881, whole genome shotgun sequence 294,271

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory