fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudohaliea rubra DSM 19751

Genome identifier: GCF_000764025.1

NCBI assembly name: ASM76402v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Halieaceae, Pseudohaliea, Pseudohaliea rubra

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Cellvibrionales, Halieaceae, Pseudohaliea, Pseudohaliea rubra

Scaffolds: 86

Genes: 2,941 Protein-coding: 2,846 RNAs: 50 pseudogenes: 45

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_KN234745.1 Pseudohaliea rubra DSM 19751 scaffold1, whole genome shotgun sequence 253,690
NZ_KN234746.1 Pseudohaliea rubra DSM 19751 scaffold2, whole genome shotgun sequence 176,273
NZ_KN234747.1 Pseudohaliea rubra DSM 19751 scaffold3, whole genome shotgun sequence 128,078
NZ_KN234748.1 Pseudohaliea rubra DSM 19751 scaffold4, whole genome shotgun sequence 124,998
NZ_KN234749.1 Pseudohaliea rubra DSM 19751 scaffold5, whole genome shotgun sequence 124,965
NZ_KN234750.1 Pseudohaliea rubra DSM 19751 scaffold6, whole genome shotgun sequence 136,894
NZ_KN234751.1 Pseudohaliea rubra DSM 19751 scaffold7, whole genome shotgun sequence 102,461
NZ_KN234752.1 Pseudohaliea rubra DSM 19751 scaffold8, whole genome shotgun sequence 101,840
NZ_KN234753.1 Pseudohaliea rubra DSM 19751 scaffold9, whole genome shotgun sequence 100,544
NZ_KN234754.1 Pseudohaliea rubra DSM 19751 scaffold10, whole genome shotgun sequence 95,681
NZ_KN234755.1 Pseudohaliea rubra DSM 19751 scaffold11, whole genome shotgun sequence 81,568
NZ_KN234756.1 Pseudohaliea rubra DSM 19751 scaffold12, whole genome shotgun sequence 76,854
NZ_KN234757.1 Pseudohaliea rubra DSM 19751 scaffold13, whole genome shotgun sequence 67,695
NZ_KN234758.1 Pseudohaliea rubra DSM 19751 scaffold14, whole genome shotgun sequence 63,812
NZ_KN234759.1 Pseudohaliea rubra DSM 19751 scaffold15, whole genome shotgun sequence 62,769
NZ_KN234760.1 Pseudohaliea rubra DSM 19751 scaffold16, whole genome shotgun sequence 62,661
NZ_KN234761.1 Pseudohaliea rubra DSM 19751 scaffold17, whole genome shotgun sequence 59,415
NZ_KN234762.1 Pseudohaliea rubra DSM 19751 scaffold18, whole genome shotgun sequence 57,376
NZ_KN234763.1 Pseudohaliea rubra DSM 19751 scaffold19, whole genome shotgun sequence 51,052
NZ_KN234764.1 Pseudohaliea rubra DSM 19751 scaffold20, whole genome shotgun sequence 80,225
NZ_KN234765.1 Pseudohaliea rubra DSM 19751 scaffold21, whole genome shotgun sequence 47,920
NZ_KN234766.1 Pseudohaliea rubra DSM 19751 scaffold22, whole genome shotgun sequence 45,679
NZ_KN234767.1 Pseudohaliea rubra DSM 19751 scaffold23, whole genome shotgun sequence 62,570
NZ_KN234768.1 Pseudohaliea rubra DSM 19751 scaffold24, whole genome shotgun sequence 43,726
NZ_KN234769.1 Pseudohaliea rubra DSM 19751 scaffold25, whole genome shotgun sequence 41,517
NZ_KN234770.1 Pseudohaliea rubra DSM 19751 scaffold26, whole genome shotgun sequence 40,073
NZ_KN234771.1 Pseudohaliea rubra DSM 19751 scaffold27, whole genome shotgun sequence 39,393
NZ_KN234772.1 Pseudohaliea rubra DSM 19751 scaffold28, whole genome shotgun sequence 38,706
NZ_KN234773.1 Pseudohaliea rubra DSM 19751 scaffold29, whole genome shotgun sequence 36,734
NZ_KN234774.1 Pseudohaliea rubra DSM 19751 scaffold30, whole genome shotgun sequence 36,016
NZ_KN234775.1 Pseudohaliea rubra DSM 19751 scaffold31, whole genome shotgun sequence 34,753
NZ_KN234776.1 Pseudohaliea rubra DSM 19751 scaffold32, whole genome shotgun sequence 34,322
NZ_KN234777.1 Pseudohaliea rubra DSM 19751 scaffold33, whole genome shotgun sequence 33,601
NZ_KN234778.1 Pseudohaliea rubra DSM 19751 scaffold34, whole genome shotgun sequence 31,930
NZ_KN234779.1 Pseudohaliea rubra DSM 19751 scaffold35, whole genome shotgun sequence 29,405
NZ_KN234780.1 Pseudohaliea rubra DSM 19751 scaffold36, whole genome shotgun sequence 29,346
NZ_KN234781.1 Pseudohaliea rubra DSM 19751 scaffold37, whole genome shotgun sequence 28,038
NZ_KN234782.1 Pseudohaliea rubra DSM 19751 scaffold38, whole genome shotgun sequence 27,962
NZ_KN234783.1 Pseudohaliea rubra DSM 19751 scaffold39, whole genome shotgun sequence 27,572
NZ_KN234784.1 Pseudohaliea rubra DSM 19751 scaffold40, whole genome shotgun sequence 44,384
NZ_KN234785.1 Pseudohaliea rubra DSM 19751 scaffold41, whole genome shotgun sequence 25,727
NZ_KN234786.1 Pseudohaliea rubra DSM 19751 scaffold42, whole genome shotgun sequence 24,779
NZ_KN234787.1 Pseudohaliea rubra DSM 19751 scaffold43, whole genome shotgun sequence 24,704
NZ_KN234788.1 Pseudohaliea rubra DSM 19751 scaffold44, whole genome shotgun sequence 21,153
NZ_KN234789.1 Pseudohaliea rubra DSM 19751 scaffold45, whole genome shotgun sequence 20,187
NZ_KN234790.1 Pseudohaliea rubra DSM 19751 scaffold46, whole genome shotgun sequence 20,569
NZ_KN234791.1 Pseudohaliea rubra DSM 19751 scaffold47, whole genome shotgun sequence 18,958
NZ_KN234792.1 Pseudohaliea rubra DSM 19751 scaffold48, whole genome shotgun sequence 17,927
NZ_KN234793.1 Pseudohaliea rubra DSM 19751 scaffold49, whole genome shotgun sequence 16,960
NZ_KN234794.1 Pseudohaliea rubra DSM 19751 scaffold50, whole genome shotgun sequence 16,323
NZ_KN234795.1 Pseudohaliea rubra DSM 19751 scaffold51, whole genome shotgun sequence 16,092
NZ_KN234796.1 Pseudohaliea rubra DSM 19751 scaffold52, whole genome shotgun sequence 15,947
NZ_KN234797.1 Pseudohaliea rubra DSM 19751 scaffold53, whole genome shotgun sequence 15,578
NZ_KN234798.1 Pseudohaliea rubra DSM 19751 scaffold54, whole genome shotgun sequence 13,966
NZ_KN234799.1 Pseudohaliea rubra DSM 19751 scaffold55, whole genome shotgun sequence 13,610
NZ_KN234800.1 Pseudohaliea rubra DSM 19751 scaffold56, whole genome shotgun sequence 11,329
NZ_KN234801.1 Pseudohaliea rubra DSM 19751 scaffold57, whole genome shotgun sequence 10,350
NZ_KN234802.1 Pseudohaliea rubra DSM 19751 scaffold58, whole genome shotgun sequence 10,069
NZ_KN234803.1 Pseudohaliea rubra DSM 19751 scaffold59, whole genome shotgun sequence 10,040
NZ_KN234804.1 Pseudohaliea rubra DSM 19751 scaffold60, whole genome shotgun sequence 9,877
NZ_KN234805.1 Pseudohaliea rubra DSM 19751 scaffold61, whole genome shotgun sequence 9,513
NZ_KN234806.1 Pseudohaliea rubra DSM 19751 scaffold62, whole genome shotgun sequence 9,124
NZ_KN234807.1 Pseudohaliea rubra DSM 19751 scaffold63, whole genome shotgun sequence 8,696
NZ_KN234808.1 Pseudohaliea rubra DSM 19751 scaffold64, whole genome shotgun sequence 7,792
NZ_KN234809.1 Pseudohaliea rubra DSM 19751 scaffold65, whole genome shotgun sequence 7,623
NZ_KN234810.1 Pseudohaliea rubra DSM 19751 scaffold66, whole genome shotgun sequence 7,428
NZ_KN234811.1 Pseudohaliea rubra DSM 19751 scaffold67, whole genome shotgun sequence 7,328
NZ_KN234812.1 Pseudohaliea rubra DSM 19751 scaffold68, whole genome shotgun sequence 6,949
NZ_KN234813.1 Pseudohaliea rubra DSM 19751 scaffold69, whole genome shotgun sequence 5,158
NZ_KN234814.1 Pseudohaliea rubra DSM 19751 scaffold70, whole genome shotgun sequence 4,808
NZ_KN234815.1 Pseudohaliea rubra DSM 19751 scaffold71, whole genome shotgun sequence 4,298
NZ_KN234816.1 Pseudohaliea rubra DSM 19751 scaffold72, whole genome shotgun sequence 3,761
NZ_KN234817.1 Pseudohaliea rubra DSM 19751 scaffold73, whole genome shotgun sequence 3,460
NZ_KN234818.1 Pseudohaliea rubra DSM 19751 scaffold74, whole genome shotgun sequence 3,325
NZ_KN234819.1 Pseudohaliea rubra DSM 19751 scaffold75, whole genome shotgun sequence 3,223
NZ_KN234820.1 Pseudohaliea rubra DSM 19751 scaffold76, whole genome shotgun sequence 3,057
NZ_KN234821.1 Pseudohaliea rubra DSM 19751 scaffold77, whole genome shotgun sequence 2,936
NZ_KN234822.1 Pseudohaliea rubra DSM 19751 scaffold78, whole genome shotgun sequence 2,874
NZ_KN234823.1 Pseudohaliea rubra DSM 19751 scaffold79, whole genome shotgun sequence 2,761
NZ_KN234824.1 Pseudohaliea rubra DSM 19751 scaffold80, whole genome shotgun sequence 2,201
NZ_KN234825.1 Pseudohaliea rubra DSM 19751 scaffold81, whole genome shotgun sequence 1,986
NZ_KN234826.1 Pseudohaliea rubra DSM 19751 scaffold82, whole genome shotgun sequence 1,638
NZ_KN234827.1 Pseudohaliea rubra DSM 19751 scaffold83, whole genome shotgun sequence 1,549
NZ_KN234828.1 Pseudohaliea rubra DSM 19751 scaffold84, whole genome shotgun sequence 1,538
NZ_KN234829.1 Pseudohaliea rubra DSM 19751 scaffold85, whole genome shotgun sequence 1,363
NZ_KN234830.1 Pseudohaliea rubra DSM 19751 scaffold86, whole genome shotgun sequence 1,271

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory