fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudooceanicola atlanticus 22II-s11g

Genome identifier: GCF_000768315.1

NCBI assembly name: ASM76831v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Pseudooceanicola, Pseudooceanicola atlanticus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Pseudooceanicola, Pseudooceanicola atlanticus

Scaffolds: 47

Genes: 4,710 Protein-coding: 4,616 RNAs: 50 pseudogenes: 44

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_AQQX01000001.1 Pseudooceanicola atlanticus strain 22II-s11g contig1, whole genome shotgun sequence 843,296
NZ_AQQX01000002.1 Pseudooceanicola atlanticus strain 22II-s11g contig2, whole genome shotgun sequence 776,538
NZ_AQQX01000003.1 Pseudooceanicola atlanticus strain 22II-s11g contig3, whole genome shotgun sequence 690,946
NZ_AQQX01000004.1 Pseudooceanicola atlanticus strain 22II-s11g contig4, whole genome shotgun sequence 548,758
NZ_AQQX01000005.1 Pseudooceanicola atlanticus strain 22II-s11g contig5, whole genome shotgun sequence 237,157
NZ_AQQX01000006.1 Pseudooceanicola atlanticus strain 22II-s11g contig6, whole genome shotgun sequence 177,210
NZ_AQQX01000007.1 Pseudooceanicola atlanticus strain 22II-s11g contig7, whole genome shotgun sequence 150,157
NZ_AQQX01000008.1 Pseudooceanicola atlanticus strain 22II-s11g contig8, whole genome shotgun sequence 135,102
NZ_AQQX01000009.1 Pseudooceanicola atlanticus strain 22II-s11g contig9, whole genome shotgun sequence 124,027
NZ_AQQX01000010.1 Pseudooceanicola atlanticus strain 22II-s11g contig10, whole genome shotgun sequence 113,712
NZ_AQQX01000011.1 Pseudooceanicola atlanticus strain 22II-s11g contig11, whole genome shotgun sequence 110,927
NZ_AQQX01000012.1 Pseudooceanicola atlanticus strain 22II-s11g contig12, whole genome shotgun sequence 107,712
NZ_AQQX01000013.1 Pseudooceanicola atlanticus strain 22II-s11g contig13, whole genome shotgun sequence 101,422
NZ_AQQX01000014.1 Pseudooceanicola atlanticus strain 22II-s11g contig14, whole genome shotgun sequence 83,066
NZ_AQQX01000015.1 Pseudooceanicola atlanticus strain 22II-s11g contig15, whole genome shotgun sequence 82,940
NZ_AQQX01000016.1 Pseudooceanicola atlanticus strain 22II-s11g contig16, whole genome shotgun sequence 70,940
NZ_AQQX01000017.1 Pseudooceanicola atlanticus strain 22II-s11g contig17, whole genome shotgun sequence 62,109
NZ_AQQX01000018.1 Pseudooceanicola atlanticus strain 22II-s11g contig18, whole genome shotgun sequence 49,341
NZ_AQQX01000019.1 Pseudooceanicola atlanticus strain 22II-s11g contig19, whole genome shotgun sequence 48,112
NZ_AQQX01000020.1 Pseudooceanicola atlanticus strain 22II-s11g contig20, whole genome shotgun sequence 39,959
NZ_AQQX01000021.1 Pseudooceanicola atlanticus strain 22II-s11g contig21, whole genome shotgun sequence 31,175
NZ_AQQX01000022.1 Pseudooceanicola atlanticus strain 22II-s11g contig22, whole genome shotgun sequence 30,319
NZ_AQQX01000023.1 Pseudooceanicola atlanticus strain 22II-s11g contig23, whole genome shotgun sequence 29,563
NZ_AQQX01000024.1 Pseudooceanicola atlanticus strain 22II-s11g contig24, whole genome shotgun sequence 29,077
NZ_AQQX01000025.1 Pseudooceanicola atlanticus strain 22II-s11g contig25, whole genome shotgun sequence 26,950
NZ_AQQX01000026.1 Pseudooceanicola atlanticus strain 22II-s11g contig26, whole genome shotgun sequence 26,498
NZ_AQQX01000027.1 Pseudooceanicola atlanticus strain 22II-s11g contig27, whole genome shotgun sequence 25,674
NZ_AQQX01000028.1 Pseudooceanicola atlanticus strain 22II-s11g contig28, whole genome shotgun sequence 20,598
NZ_AQQX01000029.1 Pseudooceanicola atlanticus strain 22II-s11g contig29, whole genome shotgun sequence 20,492
NZ_AQQX01000030.1 Pseudooceanicola atlanticus strain 22II-s11g contig30, whole genome shotgun sequence 19,807
NZ_AQQX01000031.1 Pseudooceanicola atlanticus strain 22II-s11g contig31, whole genome shotgun sequence 19,691
NZ_AQQX01000032.1 Pseudooceanicola atlanticus strain 22II-s11g contig32, whole genome shotgun sequence 18,189
NZ_AQQX01000033.1 Pseudooceanicola atlanticus strain 22II-s11g contig33, whole genome shotgun sequence 13,352
NZ_AQQX01000034.1 Pseudooceanicola atlanticus strain 22II-s11g contig34, whole genome shotgun sequence 13,198
NZ_AQQX01000035.1 Pseudooceanicola atlanticus strain 22II-s11g contig35, whole genome shotgun sequence 13,073
NZ_AQQX01000036.1 Pseudooceanicola atlanticus strain 22II-s11g contig36, whole genome shotgun sequence 11,411
NZ_AQQX01000037.1 Pseudooceanicola atlanticus strain 22II-s11g contig37, whole genome shotgun sequence 9,868
NZ_AQQX01000038.1 Pseudooceanicola atlanticus strain 22II-s11g contig38, whole genome shotgun sequence 5,516
NZ_AQQX01000039.1 Pseudooceanicola atlanticus strain 22II-s11g contig39, whole genome shotgun sequence 4,139
NZ_AQQX01000040.1 Pseudooceanicola atlanticus strain 22II-s11g contig40, whole genome shotgun sequence 3,877
NZ_AQQX01000041.1 Pseudooceanicola atlanticus strain 22II-s11g contig41, whole genome shotgun sequence 3,785
NZ_AQQX01000042.1 Pseudooceanicola atlanticus strain 22II-s11g contig42, whole genome shotgun sequence 2,810
NZ_AQQX01000043.1 Pseudooceanicola atlanticus strain 22II-s11g contig43, whole genome shotgun sequence 2,106
NZ_AQQX01000044.1 Pseudooceanicola atlanticus strain 22II-s11g contig44, whole genome shotgun sequence 1,087
NZ_AQQX01000045.1 Pseudooceanicola atlanticus strain 22II-s11g contig45, whole genome shotgun sequence 948
NZ_AQQX01000046.1 Pseudooceanicola atlanticus strain 22II-s11g contig46, whole genome shotgun sequence 838
NZ_AQQX01000047.1 Pseudooceanicola atlanticus strain 22II-s11g contig47, whole genome shotgun sequence 833

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory