fast.genomicscompare 6,575 genera of bacteria & archaea

 

Clostridium_J culturomicium human stool

Genome identifier: GCF_000821305.1

NCBI assembly name: Clostridium culturomicsense

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Clostridiales, Clostridiaceae, Clostridium_J, Clostridium_J culturomicium

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Clostridiaceae, Clostridium, Clostridium culturomicium

Scaffolds: 17

Genes: 4,223 Protein-coding: 4,043 RNAs: 127 pseudogenes: 53

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_CCXK01000001.1 Clostridium culturomicium isolate human stool, whole genome shotgun sequence 15,038
NZ_CCXK01000002.1 Clostridium culturomicium isolate human stool, whole genome shotgun sequence 19,266
NZ_CCXK01000003.1 Clostridium culturomicium isolate human stool, whole genome shotgun sequence 1,186
NZ_CCXK01000004.1 Clostridium culturomicium isolate human stool, whole genome shotgun sequence 1,380
NZ_CCXK01000005.1 Clostridium culturomicium isolate human stool, whole genome shotgun sequence 29,105
NZ_CCXK01000006.1 Clostridium culturomicium isolate human stool, whole genome shotgun sequence 933
NZ_CCXK01000007.1 Clostridium culturomicium isolate human stool, whole genome shotgun sequence 2,178
NZ_CCXK01000008.1 Clostridium culturomicium isolate human stool, whole genome shotgun sequence 9,321
NZ_CCXK01000009.1 Clostridium culturomicium isolate human stool, whole genome shotgun sequence 1,103
NZ_CCXK01000010.1 Clostridium culturomicium isolate human stool, whole genome shotgun sequence 3,034
NZ_CCXK01000011.1 Clostridium culturomicium isolate human stool, whole genome shotgun sequence 1,252
NZ_CCXK01000012.1 Clostridium culturomicium isolate human stool, whole genome shotgun sequence 264,430
NZ_CCXK01000013.1 Clostridium culturomicium isolate human stool, whole genome shotgun sequence 408,313
NZ_CCXK01000014.1 Clostridium culturomicium isolate human stool, whole genome shotgun sequence 627,016
NZ_CCXK01000015.1 Clostridium culturomicium isolate human stool, whole genome shotgun sequence 524,454
NZ_CCXK01000016.1 Clostridium culturomicium isolate human stool, whole genome shotgun sequence 695,847
NZ_CCXK01000017.1 Clostridium culturomicium isolate human stool, whole genome shotgun sequence 1,721,326

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory