fast.genomicscompare 6,575 genera of bacteria & archaea

 

Clostridioides difficile DSM 1296T

Genome identifier: GCF_001077535.1

NCBI assembly name: ASM107753v2

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Peptostreptococcales, Peptostreptococcaceae, Clostridioides, Clostridioides difficile

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Peptostreptococcaceae, Clostridioides, Clostridioides difficile

Scaffolds: 2

Genes: 3,823 Protein-coding: 3,657 RNAs: 129 pseudogenes: 37

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_CP011968.1 Clostridioides difficile ATCC 9689 = DSM 1296 strain DSM 1296T chromosome, complete genome 4,109,692
NZ_CP011969.1 Clostridioides difficile ATCC 9689 = DSM 1296 strain DSM 1296T plasmid unnamed, complete sequence 45,187

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory