fast.genomicscompare 6,575 genera of bacteria & archaea

 

Rhodobacter_B lobularis IGS

Genome identifier: GCF_001078595.1

NCBI assembly name: ASM107859v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Rhodobacter_B, Rhodobacter_B lobularis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Rhodobacter, Candidatus Rhodobacter lobularis

Scaffolds: 2

Genes: 4,907 Protein-coding: 4,788 RNAs: 54 pseudogenes: 65

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_LFTY01000001.1 Candidatus Rhodobacter lobularis isolate IGS scaffold1, whole genome shotgun sequence 1,042,199
NZ_LFTY01000002.1 Candidatus Rhodobacter lobularis isolate IGS scaffold2, whole genome shotgun sequence 3,995,303

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory