fast.genomicscompare 6,575 genera of bacteria & archaea

 

Prosthecomicrobium_A hirschii 16

Genome identifier: GCF_001305515.1

NCBI assembly name: ASM130551v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Ancalomicrobiaceae, Prosthecomicrobium_A, Prosthecomicrobium_A hirschii

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Kaistiaceae, Prosthecomicrobium, Prosthecomicrobium hirschii

Scaffolds: 6

Genes: 5,844 Protein-coding: 5,713 RNAs: 52 pseudogenes: 79

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_LJYW01000001.1 Prosthecomicrobium hirschii strain 16 C1, whole genome shotgun sequence 6,323,789
NZ_LJYW01000002.1 Prosthecomicrobium hirschii strain 16 C2, whole genome shotgun sequence 71,298
NZ_LJYW01000003.1 Prosthecomicrobium hirschii strain 16 C3, whole genome shotgun sequence 19,847
NZ_LJYW01000004.1 Prosthecomicrobium hirschii strain 16 C4, whole genome shotgun sequence 21,425
NZ_LJYW01000005.1 Prosthecomicrobium hirschii strain 16 C5, whole genome shotgun sequence 32,300
NZ_LJYW01000006.1 Prosthecomicrobium hirschii strain 16 C6, whole genome shotgun sequence 16,324

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory