fast.genomicscompare 6,575 genera of bacteria & archaea

 

Oxobacter pfennigii DSM 3222

Genome identifier: GCF_001317355.1

NCBI assembly name: ASM131735v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Clostridiales, Oxobacteraceae, Oxobacter, Oxobacter pfennigii

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Clostridiaceae, Oxobacter, Oxobacter pfennigii

Scaffolds: 69

Genes: 4,430 Protein-coding: 4,285 RNAs: 83 pseudogenes: 62

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_LKET01000001.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000001, whole genome shotgun sequence 2,613
NZ_LKET01000002.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000002, whole genome shotgun sequence 2,755
NZ_LKET01000003.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000003, whole genome shotgun sequence 20,664
NZ_LKET01000004.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000004, whole genome shotgun sequence 575
NZ_LKET01000005.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000005, whole genome shotgun sequence 3,619
NZ_LKET01000006.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000006, whole genome shotgun sequence 58,126
NZ_LKET01000007.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000007, whole genome shotgun sequence 2,013
NZ_LKET01000008.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000008, whole genome shotgun sequence 10,727
NZ_LKET01000009.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000009, whole genome shotgun sequence 10,085
NZ_LKET01000010.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000010, whole genome shotgun sequence 3,153
NZ_LKET01000011.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000011, whole genome shotgun sequence 26,448
NZ_LKET01000012.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000012, whole genome shotgun sequence 48,308
NZ_LKET01000013.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000013, whole genome shotgun sequence 1,407
NZ_LKET01000014.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000014, whole genome shotgun sequence 156,803
NZ_LKET01000015.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000015, whole genome shotgun sequence 663
NZ_LKET01000016.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000016, whole genome shotgun sequence 233,891
NZ_LKET01000017.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000017, whole genome shotgun sequence 27,849
NZ_LKET01000018.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000018, whole genome shotgun sequence 539
NZ_LKET01000019.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000019, whole genome shotgun sequence 28,730
NZ_LKET01000020.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000020, whole genome shotgun sequence 2,219
NZ_LKET01000021.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000021, whole genome shotgun sequence 408,123
NZ_LKET01000022.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000022, whole genome shotgun sequence 1,601
NZ_LKET01000023.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000023, whole genome shotgun sequence 12,719
NZ_LKET01000024.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000024, whole genome shotgun sequence 42,524
NZ_LKET01000025.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000025, whole genome shotgun sequence 790
NZ_LKET01000026.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000026, whole genome shotgun sequence 156,581
NZ_LKET01000027.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000027, whole genome shotgun sequence 88,094
NZ_LKET01000028.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000028, whole genome shotgun sequence 266,056
NZ_LKET01000029.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000029, whole genome shotgun sequence 359,554
NZ_LKET01000030.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000030, whole genome shotgun sequence 96,026
NZ_LKET01000031.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000031, whole genome shotgun sequence 55,619
NZ_LKET01000032.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000032, whole genome shotgun sequence 512,306
NZ_LKET01000033.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000033, whole genome shotgun sequence 39,686
NZ_LKET01000034.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000034, whole genome shotgun sequence 3,042
NZ_LKET01000035.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000035, whole genome shotgun sequence 136,206
NZ_LKET01000036.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000036, whole genome shotgun sequence 3,253
NZ_LKET01000037.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000037, whole genome shotgun sequence 7,678
NZ_LKET01000038.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000038, whole genome shotgun sequence 5,714
NZ_LKET01000039.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000039, whole genome shotgun sequence 513,968
NZ_LKET01000040.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000040, whole genome shotgun sequence 3,120
NZ_LKET01000041.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000041, whole genome shotgun sequence 117,573
NZ_LKET01000042.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000042, whole genome shotgun sequence 1,250
NZ_LKET01000043.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000043, whole genome shotgun sequence 110,367
NZ_LKET01000044.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000044, whole genome shotgun sequence 630
NZ_LKET01000045.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000045, whole genome shotgun sequence 62,584
NZ_LKET01000046.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000046, whole genome shotgun sequence 1,617
NZ_LKET01000047.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000047, whole genome shotgun sequence 1,408
NZ_LKET01000048.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000048, whole genome shotgun sequence 1,582
NZ_LKET01000049.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000049, whole genome shotgun sequence 1,382
NZ_LKET01000050.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000050, whole genome shotgun sequence 1,358
NZ_LKET01000051.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000051, whole genome shotgun sequence 263,100
NZ_LKET01000052.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000052, whole genome shotgun sequence 1,300
NZ_LKET01000053.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000053, whole genome shotgun sequence 1,153
NZ_LKET01000054.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000054, whole genome shotgun sequence 1,095
NZ_LKET01000055.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000055, whole genome shotgun sequence 1,626
NZ_LKET01000056.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000056, whole genome shotgun sequence 26,822
NZ_LKET01000057.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000057, whole genome shotgun sequence 861
NZ_LKET01000058.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000058, whole genome shotgun sequence 788
NZ_LKET01000059.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000059, whole genome shotgun sequence 648
NZ_LKET01000060.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000060, whole genome shotgun sequence 1,319
NZ_LKET01000061.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000061, whole genome shotgun sequence 608
NZ_LKET01000062.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000062, whole genome shotgun sequence 77,641
NZ_LKET01000063.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000063, whole genome shotgun sequence 552
NZ_LKET01000064.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000064, whole genome shotgun sequence 512
NZ_LKET01000065.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000065, whole genome shotgun sequence 781
NZ_LKET01000066.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000066, whole genome shotgun sequence 1,855
NZ_LKET01000067.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000067, whole genome shotgun sequence 36,840
NZ_LKET01000068.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000068, whole genome shotgun sequence 438,878
NZ_LKET01000069.1 Oxobacter pfennigii strain DSM 3222 OXPF_contig000069, whole genome shotgun sequence 575

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory