fast.genomicscompare 6,575 genera of bacteria & archaea

 

Thiohalorhabdus denitrificans HL 19

Genome identifier: GCF_001399755.1

NCBI assembly name: ASM139975v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Thiohalorhabdales, Thiohalorhabdaceae, Thiohalorhabdus, Thiohalorhabdus denitrificans

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Thiohalorhabdus, Thiohalorhabdus denitrificans

Scaffolds: 15

Genes: 2,749 Protein-coding: 2,677 RNAs: 53 pseudogenes: 19

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_LJCP01000001.1 Thiohalorhabdus denitrificans strain HL 19 contig_10, whole genome shotgun sequence 27,480
NZ_LJCP01000002.1 Thiohalorhabdus denitrificans strain HL 19 contig_453, whole genome shotgun sequence 1,355
NZ_LJCP01000003.1 Thiohalorhabdus denitrificans strain HL 19 contig_9, whole genome shotgun sequence 45,623
NZ_LJCP01000004.1 Thiohalorhabdus denitrificans strain HL 19 contig_17, whole genome shotgun sequence 4,184
NZ_LJCP01000005.1 Thiohalorhabdus denitrificans strain HL 19 contig_7, whole genome shotgun sequence 201,999
NZ_LJCP01000006.1 Thiohalorhabdus denitrificans strain HL 19 contig_5, whole genome shotgun sequence 344,154
NZ_LJCP01000007.1 Thiohalorhabdus denitrificans strain HL 19 contig_3, whole genome shotgun sequence 390,112
NZ_LJCP01000008.1 Thiohalorhabdus denitrificans strain HL 19 contig_6, whole genome shotgun sequence 255,209
NZ_LJCP01000009.1 Thiohalorhabdus denitrificans strain HL 19 contig_8, whole genome shotgun sequence 158,289
NZ_LJCP01000010.1 Thiohalorhabdus denitrificans strain HL 19 contig_1, whole genome shotgun sequence 605,137
NZ_LJCP01000011.1 Thiohalorhabdus denitrificans strain HL 19 contig_2, whole genome shotgun sequence 447,509
NZ_LJCP01000012.1 Thiohalorhabdus denitrificans strain HL 19 contig_315, whole genome shotgun sequence 1,498
NZ_LJCP01000013.1 Thiohalorhabdus denitrificans strain HL 19 contig_11, whole genome shotgun sequence 27,001
NZ_LJCP01000014.1 Thiohalorhabdus denitrificans strain HL 19 contig_4, whole genome shotgun sequence 346,871
NZ_LJCP01000015.1 Thiohalorhabdus denitrificans strain HL 19 contig_12, whole genome shotgun sequence 12,584

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory